RNA id: XM_036966296.1


Basic Information

Item Value
RNA id XM_036966296.1
length 3177
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC110518117
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4514323 ~ 4531079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCTTTCAGATTTGTTTACTTCACCGTCATTTCAATGGCGGAACACTGAAAAAAAGCATTTGAGAGCGGTCAGATTTCGGATATATTGTTCTAGTTACGAACGAGCTGAGTACTTACATTTATCATCTTGGCTAGCTAACATAGTGAACGAATCGTTTTGTCCCAATATTTCTCTTAGTAAACCTTCTGGCTGGGGCATTTCCATCAATTAAAGCACGAGATCCCCGAAATGGCAGATAACAACACAGACCAAGAAAAAGCAATAGCTGCAAATGCGTTGGAGGCGTTTACGGCTGGAAACTATGAGGAATCTTTGAAACACCTTGGAAAGCTGCAAGAGTTGAACAAGGAGGACTACAAGATTGCTTTGAATAAAGCAATAGCTGAATTCTACAAGAGCGGCCAAACCACCACATGCACCCTGAAGCAGACTCTTATTGCAATGAAAAACCAGGTTCACACTTCAATGGAGGATATTGATGGTTTGGATGATGTAGAAAACAGTCTTCTCTACTACAATCAAGCAATCATTCACTACCACATGAGACAGTACTCCGAAGCTATTGCTATTGGAGAGAGGCTGTACCAGTTTCTGGAGCCGTTTGAAGAGAAGTTTGCTCTGGCGGTCTGCTTCTTGCTGGTGGATCTGTACCTGCTAACGTTCCAGCCAGAGAAGGCCCTCCATCTCCTTGCTGTGCTGGAGAAACTGTCTGTACAGGGAAATAACAAGAACGGCAAAGGGGAGGTAATATTTCAGGCACAGTGCAAGTTCTACATTCACAGGGACCCGGTAGTGGAGGCAGCAGACTTCATTCAGGATAATCTCAGGGAGCTTACTGGAGGACAGAGTGTCAACAGCGCCAACAAAGATGGTCGGAACCAGAAGGCAGAGTTCATTGGCATGATCGAAGCGGCAAAATCCAAAATGCACCAGTACAAAGTGCGAGCGTACATTCAGATGAAGTCATCAAAGGCCTGCAAAAGGGAGATCAAGTCTGTGATGAACACAGCAGGGAATTCTGCTTCCTCACTCTTCCTCAAGAGTAACTTTGAGTACCTGAGAGGAAACTACCGCAAAGCAGTGAAGCTCTTAAACAGCTCCAACATCGCAGAGCACCCTGGGGCCATCAAAACAGGGGAATGTGTGCGCTGTATGTTCTGGAACAACCTGGGTTGCATACACTTTGCCATGGGGAAACACAACCTAGGTATATTCTACTTCAAAAAGGCCCTGCAGGAGAACGACCACACGTGTGCACAGCTGGGGGACGGTGGGGCGACGGGGAACGGGCAATCTAAGCAGTTCTCGGGCATCCCCATGTGTGCGCTGCTAGCCAACAAGCGTTATGAGCTGCTGTATAACTGTGGGATCCAGCTGCTGCACATCGGCCGGCCCCTGGCGGCCTTCGACTGTCTGATGGATGCTGTGCAGGTGTACCACTCTAACCCTGGCCTCTGGTTACGGTTGGCTGAGTGCTGCATTGCTGCCAACAAGGGTAGCTTAGAACAAGACAACAAGGGTCTTCCGAGTAAAAAGGGTATCGTTCAGGCCATCGTTGGGCAGGGCTACCATCGCAAGATCATCCTGGCATCACAGTCCACCCAGAACACAATCTACAGtgATGGGCAGTCTGCAGCCATTCCGGTGGCCAGTATGGAGTTTGCAGCGATCTGTCTGAGGAACGGCCTGGTCCTCCTCCCTGATCACCAGCAGCAGGAGAACAAGGCAGAGAACGGCTCCAAGAcaaccagccagtcaggcagCACAGAGAGCGGCTCAGAGAACAGCGACGCCTGCAGTGGGAAAGGTCAAGAAGGAGACAAGTTCCTTTCTGCAGCACCGTCTTCACCTCTGAGGAAACAGGAGGTTGAAAACCTCAGGTGTTCCCTCCTGGCCTGCAGTGCCTACGTGGCCCTGGTGTTAGGAGACAACCTGATGGCCCTGAACCATGCAGAGAAGCTCCTTCACCAGACCAAGCTGTCTGGATCACTCAAgttCCTGGGACACCTGTATGCTGCAGAGGCCCTCATATCCCTGGACCGGATCTCAGAGGCCATCGGTCACCTCAACCCAGAGAACGTCACTGATGTCTCCATGGGGGTGTTGTCTAGCGAGCAGGACCAAGtgtttgtgttcaCAGGGCCAGATAAAGGGGATCTGGAGCCTGTCGAGTCATGGAAGCAGACTCCTCTGTGTTACCCCAGCACAGTGAGCTCAGCCCGGGCCATAATGCTGTTCAACCTAGGCAGTGCCTATTGTCTGAGGAGTGAGTACGAGAAGGCCCGCAAGTGCCTGCATCAGGCCGCCTCCATGGTGAACACCAAGGAGATTCCTCCTGAAGCCATCTTACTGGCTGTCTACCTGGAGCTGCAGAACGggaaCACACAGCTCGCCCTGCAGATCATCAAACGTAACCAGCTCCTCCCCTCAGTGCTCCAGGCGCCCTCTCCAGACACACGAAAGAAGCCTGTTCCCTCCTCCTTCCAGCCTGTCCAACCACCCATCCAGATGCCCTCACCCTTCACAACAGTCCAGCGCAAATGAGCCCTCAACCCTTGTTCCCCTAACCCTCCTTGCCCCATTGCACAGCAACACGCACCTGTCCACCTCTCATCACTTCACCTCAGTGTATTATTTATTTAAGGCAAGCTGACCCCAACTCAGTGccggtgtagggtgaagttgtccctagatgctgatcttgacTCAGCTTTGTATTTCCTCCCACTAATGGTTAACATTGGTGgagaggaagctgatcctagatctgtacctaggggaaattGAACTCCTCAGCACCCAGACGGAGCCCCTCCAGGTCAGGTCCTGGTATGAAATGCAGAGGTCTCCTGTCGGGTGGACGAAGGGTGCGTTCACGGCCCAAATTACACCTTATCCCCTATGtaagtgcactccttttgaccagagccctatggggccctaataaaagtagtgccctatataaggaactgggtaccatttgggatggagCCTTTATTCAGTGGCTATCACCTGCAGTGTCTTTGGGGCAGATCTGACATGATTTCTCTGTTCTCTGAGAGTTTTAACTTTCCATTTGTGACAGCAACATCCGTTATGATATATACTGACCGACTTTTGCTTGGGGCAAATTAAATacctgtataaaaaaataaattttaTTTACAGAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248347 lncRNA upstream 13606 4498471 ~ 4500717 (+) False G217950
TU248353 lncRNA upstream 13606 4498471 ~ 4500717 (+) True G217950
TU248348 lncRNA upstream 13857 4498471 ~ 4500466 (+) False G217950
TU248344 lncRNA upstream 20400 4493610 ~ 4493923 (+) True G217949
TU248335 lncRNA upstream 68651 4445286 ~ 4445672 (+) True G217940
TU248549 lncRNA downstream 28430 4559509 ~ 4559920 (+) True G218107
TU248617 lncRNA downstream 137421 4668500 ~ 4668947 (+) True G218163
TU248618 lncRNA downstream 138700 4669779 ~ 4670126 (+) True G218164
TU248638 lncRNA downstream 181207 4712286 ~ 4713406 (+) True G218181
TU248659 lncRNA downstream 199726 4730805 ~ 4733206 (+) True G218195
XM_036966207.1 mRNA upstream 65415 4400757 ~ 4448908 (+) False LOC110510956
XM_036966219.1 mRNA upstream 65415 4408425 ~ 4448908 (+) False LOC110510956
XM_036966215.1 mRNA upstream 65415 4414552 ~ 4448908 (+) False LOC110510956
XM_036966233.1 mRNA upstream 65415 4429494 ~ 4448908 (+) True LOC110510956
XM_036966252.1 mRNA upstream 66271 4400757 ~ 4448052 (+) False LOC110510956
XM_036966393.1 mRNA downstream 120095 4651174 ~ 4697029 (+) False ano10a
XM_036966385.1 mRNA downstream 120104 4651183 ~ 4697029 (+) False ano10a
XM_036966399.1 mRNA downstream 120106 4651185 ~ 4697029 (+) False ano10a
XM_036966388.1 mRNA downstream 121554 4652633 ~ 4697029 (+) True ano10a
XM_036966463.1 mRNA downstream 233534 4764613 ~ 4769054 (+) False LOC118936613
TU248288 other upstream 61767 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 211467 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 371234 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 785167 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 969845 3540799 ~ 3544478 (+) True LOC110520752
TU248792 other downstream 406018 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 413924 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 487615 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 794348 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 929013 5460092 ~ 5561271 (+) False G218465

Expression Profile