RNA id: XM_036966467.1


Basic Information

Item Value
RNA id XM_036966467.1
length 1673
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC118936613
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4764613 ~ 4770261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGGTGATGAGTTTGCAGAGGCCACCTCCTGTACTCCATATCTTGCTCAGTCATAACAGGGTTTGCAATAAGTGTATTTTTCTCTTATCAGTCTTTCTTCCCCCTTGATACAACATCCAGAGTCCAAGGCCAAACTGGTCTGCTTGCTAGACTACTAGCTACAGCTGGATAATTGGGGGACTTCACCCATGTACACATGTGCATTGTATAtggagggcctgattggtgtcagttttgccccagctaacacacctgacttcAATAATCACCGGATCGtggtcttcagtttagaatgacaTTTgatttaatcagctgtgtttgctagggatggagaaagtgacaccaatcaggccctcgactGGAATAGCCCACCCCTGGTATAGGCAGTAAGGGCAGGGTAACGCAACTACAATGGATACAGTAGTATGCTAAGCAGTATGTTCTTAATTAACACAGGAGTCTGCTgctgggaggacggctcataacaatggctggaacggagcaaatggcaTCAAATGCCTTGAAACCAGGTGTTTGCTGTATTTAGTAACATTTCACTAATgtcactccagtcattaccataaGCCCGCTCTCCCCAATTACgctgccaccagcctcctgtggttctTAAACCCTCCCATCTCCTATCCTATATCACCCTATTCGACTGAGGGCCAAGTGTATGCAGGTTCACTCCCATGTACTTGATCAAGTAAAGTCACAGATCATTTAGGAACTCccatcacctggttgtctaggtcttaattggacATATTTCAAAGCTTCACGACCATGCTGAACAACAAGCAGCTGGAGCCAGTGGCTGTACGAGTCAACATGCAGCAGCAGCAAGTGGCCAGTGTCCGCAACAGGAGACTGGCTCTGCAGATGGAGAACAGGACCTCTGTGCAGGCTGCCCTGCAGCCCAAGAGCCTGAAGCAGCGCCTGGGGAAGGGCGATGTCCTGGCAAGGCTAGGTCGGCCCATGGGGACCCTGATGCGGGGGGCCACCAGAAGCCAAGGGTTTGCTGTACGGGGACTGCGAGGAATGCATCGAGGAGGTTTCGGAGTGTGTGGAAACAACAGAAGGGGCTTTTTTAGAGGTGGCTATGCTTTCAGAGGTGTGAATCAGATGCGTGCCCAGGGAGGGGTGACTAAGCTTAGGTTTCGTCAGGGCTTGAGGTTGCAAGGTGGCCAGCTGAACGATGCTGGAGTGCTGGTTACCTGCGGAGCCAGGAATGAACTGGGCCCGAGAGGAAGAGGCAGAGGAGCTGGTCTGGGCTTGCGGGGCCGGGGATGGTTCCGAGGCATGGGCAAACCTGAAAAAATCCCCACCAAAGAGGAGCTGGACAACCAACTAGACAACTACATGTCAATGACCAAGAGCCACCTAGACGCAGAGCTGGATTCCTACATGGCCATGGCAGGCTCCGACTACATGGAGTAGAACCCTGCTGGAAGACGGTGTCCATGGTGCTATTTCAGGAGAGGAATACTCTACTACAGCGATAAGCACAACATCCCTTCATTGCTGGCAAGAGGATGAGTTTTCGATTTTGACAGAGTGTGCAAGGTGCAACCCCTTTCAGATGAAATCATGGGCACCTTGCGCCCGAACTGGATTCATAGAAAAGATCAACTGTGCAAAAACCAACAAAGTTGAATACAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248664 lncRNA upstream 29782 4733765 ~ 4735372 (+) True G218196
TU248659 lncRNA upstream 31948 4730805 ~ 4733206 (+) True G218195
TU248638 lncRNA upstream 51748 4712286 ~ 4713406 (+) True G218181
TU248618 lncRNA upstream 95028 4669779 ~ 4670126 (+) True G218164
TU248617 lncRNA upstream 96207 4668500 ~ 4668947 (+) True G218163
TU248699 lncRNA downstream 10226 4779280 ~ 4779656 (+) True G218228
TU248730 lncRNA downstream 93538 4862592 ~ 4869562 (+) True G218259
TU248748 lncRNA downstream 124216 4893270 ~ 4893586 (+) True G218274
TU248762 lncRNA downstream 146094 4915148 ~ 4922149 (+) True G218286
TU248788 lncRNA downstream 160533 4929587 ~ 4929806 (+) True G218306
XM_036966393.1 mRNA upstream 68125 4651174 ~ 4697029 (+) False ano10a
XM_036966385.1 mRNA upstream 68125 4651183 ~ 4697029 (+) False ano10a
XM_036966399.1 mRNA upstream 68125 4651185 ~ 4697029 (+) False ano10a
XM_036966388.1 mRNA upstream 68125 4652633 ~ 4697029 (+) True ano10a
XR_005040211.1 mRNA upstream 234075 4514323 ~ 4531079 (+) True LOC110518117
XM_036966468.1 mRNA downstream 60804 4829858 ~ 4834588 (+) True LOC118944843
XM_021587829.2 mRNA downstream 205993 4975047 ~ 4983487 (+) False LOC110507681
XM_021587838.2 mRNA downstream 206037 4975091 ~ 4983487 (+) True LOC110507681
XM_036966519.1 mRNA downstream 215651 4984705 ~ 4996809 (+) False LOC118936614
XM_036966521.1 mRNA downstream 215653 4984707 ~ 4996820 (+) False LOC118936614
TU248288 other upstream 312598 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 462298 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 622065 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 1035998 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 1220676 3540799 ~ 3544478 (+) True LOC110520752
TU248792 other downstream 168043 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 175949 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 249640 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 556373 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 691038 5460092 ~ 5561271 (+) False G218465

Expression Profile