RNA id: XM_036966468.1


Basic Information

Item Value
RNA id XM_036966468.1
length 2537
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC118944843
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4829858 ~ 4834588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTCATGTTGACGAAGGCGTGTCTTAGAAAGGGGGCTGGGTGCGAGGTAACATGGTGGTTTGGTTATCGCCTATCAGCCATAGACAGAAGAAGGTTGGAGTGACTGAACGCTTGAGTGGTCggctttttattttcatttttcctTTGATTTTGTGCTTTCGTTTgtcttcaaaatggagatggagaAGAGGATCAGTTTGGAGTTGAGGAACAAGACCCCAGCCGAGGTGGCTGAGCTGGTGGTGGACAACTGTCGGTCCAGTGATGGAGAGGTGGAAGGGCTGTCAGATGACTACAAGGAGCTGGAGTTCCTCAGCATGGTCAACGTGGGGCTCACCTCCCTGGCTAAGCTGCCCTCCCTGCCAAAACTGCTCAAGCTGGAGATCAGTGATAACATGATCGTTGGAGGTCTGGACCAGCTGTCTGAGAAGTGTCCCAACCTGACGTATCTCAACCTGAGCGGCAACAAGATCAAGGAGCTCAGCACTGTGAAGCCTCTGAAAAACCTGAAGAACCTGAAGAGTCTGGACCTGTACAGCTGTGAGATCACCACTCTGGAGGACTACAGGGAGAGTGTCTTTGAGCTGCTGCCCCAGGTCACCTTCCTGGACGGCTATGACCACGAAGACAACGAGGTGCCAGACTCCGAGGCTGACGATGATGACAACGAGGGGCTAGACTCAGAGGCTGATGATGATGACGAGCACACAGCTGGCCCCACCAGAGATGGGGATGACgacgatgatgaggatgatgagggtTCCGAAGGCGAAGAGGTGGGACTGTCCTACCTGATGAAGGATGGCATTCAGGATGAGGAAGATGATGATGACTAtgttgaagaggaggaagaggatggagtAGGAGTCcagggagagaaaaggaagagGGATGCAGAGGATGAGGGAGATGACAGCGATGGAGATGACGACTAGCTCCTCCTGTAACCGAGCATGGGATCACAACTAGGCTAGAACAACAGGAACAGGAAATAGtttgtgaatttttttttttgtataccatagatattactgtagaatctaaatgtttttaatttgttttGTAAATGTTCCATATAAAAAGAAAAGCGGGTTAGAATTATAAAATGGAATGTGGTTTTGAAACATGACATGTGGGGAGGGGCTATAGCATTCAGACAAGGTGATGTTTAACTCTGGTGAGAAGTTGTAGCGGCCCATTTCAAGTCCATCTGGTTGTGATTGTCTCCTATGCCATGTTCTCCCAAGACTTTAGTTGTCAAGCGAAAAGCTCCATGTGCTGTCTGGTTGGCTCATAGTAAGGTTTAtatgggaggagctataggaggacaggctcattgttaTGGCTTAAaatgtaacatttatttaactaggcaagtcagttaagaacaaatatttatttacaatgacggccaacccctaacccggacaatgctgggccaattgtgcgccgccctacgggactcccaatcgtagccggttgtgatacagcctggaattgaaccacaGTCTGTAGTTACGACTctagcactgatatgcagtgccttagacctctgtgccACTTGGGTATCAACCACATCAAACATACGGAAACCACACGTTTGACTCggttccatttcagccattacaatcctcctgtagctcctcccaccagcctccactggtttacACGTGGCCAACGAGTACTGTTTAACAGTGACCCGGGCAAAAAAGAACCTTAGTGAGTCGTTAGCCCCTTCTATCTGTTCACCTACACTATATGTACCCGCTGTATTGTAGGGATTGCTGACTGTTTCCTAAGTACTTTGTTTAGGACCTGGGATTTGATACCTTTAAACTTTGTCCGATCGCGGTGTCATCAATTCACTTTTAATTCCACAAACAGCCGATTTGtaagttttattttttttaatgtattgtgCTAGGGCTGCAGATGACTCTGGGTGATGTAGTTTTCACATCTCTGGGTAATGTAGTTTTCAGGTCTCTTACTCTAGCTCTGATCGTCATCAAAGAAGCCCTAGAGGTGGGTTTAAAGAGCTAATTCGTATTCAGGCTACACGGAGGTAATTTTGGACCAGTTTAGTCACATTCTAAAGCTCAGGTGGACCCAATCTCTCAGAAGGACCTGGTGATAAGCAGGAACACAGTTAATGGTCTCTTCTGTCCTGAATCCAACTTGGTACCCTGGACTTCTGTCATATCCCAATGGAAAAAAAGACTTTTCTGTctcctttttgtttgtttgcagtTTTATGGTTTTACTGTGCAAGGATTTTAAACTTGTATGACTATGTAAATAGACCTTTTATCTTTTCTGTGTAGTATTtgcttgtttttttgtgtttttttttaaacatgcaaTATCTGtccttttttaatttttaataaacaCAAAGCACATGTCAGGATGTAAAGCTTCAGACCCCGACGCTCAACATTGGTTTATTTTTTTGGCCTCAGCTGTTGAGAAAGTCATGTTTTGGAATTTATGTTAATTAATCTTCTGAAGTGTTTTTAAATAAAATTAATTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248699 lncRNA upstream 50202 4779280 ~ 4779656 (+) True G218228
TU248686 lncRNA upstream 59597 4769008 ~ 4770261 (+) False LOC118936613
TU248687 lncRNA upstream 59597 4769008 ~ 4770261 (+) True LOC118936613
TU248664 lncRNA upstream 94486 4733765 ~ 4735372 (+) True G218196
TU248659 lncRNA upstream 96652 4730805 ~ 4733206 (+) True G218195
TU248730 lncRNA downstream 28004 4862592 ~ 4869562 (+) True G218259
TU248748 lncRNA downstream 58682 4893270 ~ 4893586 (+) True G218274
TU248762 lncRNA downstream 80560 4915148 ~ 4922149 (+) True G218286
TU248788 lncRNA downstream 94999 4929587 ~ 4929806 (+) True G218306
TU248789 lncRNA downstream 99244 4933832 ~ 4934075 (+) True G218307
XM_036966442.1 mRNA upstream 60563 4764647 ~ 4769295 (+) False LOC118936613
XM_036966463.1 mRNA upstream 60804 4764613 ~ 4769054 (+) False LOC118936613
XM_036966456.1 mRNA upstream 60804 4764642 ~ 4769054 (+) False LOC118936613
XM_036966447.1 mRNA upstream 60804 4764646 ~ 4769054 (+) False LOC118936613
XM_036966429.1 mRNA upstream 60804 4764647 ~ 4769054 (+) False LOC118936613
XM_021587829.2 mRNA downstream 140459 4975047 ~ 4983487 (+) False LOC110507681
XM_021587838.2 mRNA downstream 140503 4975091 ~ 4983487 (+) True LOC110507681
XM_036966519.1 mRNA downstream 150117 4984705 ~ 4996809 (+) False LOC118936614
XM_036966521.1 mRNA downstream 150119 4984707 ~ 4996820 (+) False LOC118936614
XM_036966512.1 mRNA downstream 150122 4984710 ~ 4999197 (+) False LOC118936614
TU248288 other upstream 377302 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 527002 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 686769 4142643 ~ 4143089 (+) True G217809
TU247417 other upstream 1100702 3726530 ~ 3729156 (+) True LOC110507370
TU247379 other upstream 1285380 3540799 ~ 3544478 (+) True LOC110520752
TU248792 other downstream 102509 4937097 ~ 4939894 (+) True G218309
TU248775 other downstream 110415 4945003 ~ 4961450 (+) True G218293
TU248804 other downstream 184106 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 490839 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 625504 5460092 ~ 5561271 (+) False G218465

Expression Profile