RNA id: XM_021587838.2


Basic Information

Item Value
RNA id XM_021587838.2
length 2286
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110507681
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4975047 ~ 4983487 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAAACCTGCCCAACCATTCCTCCACTCTCATATCAGCTGAAATAATTTATAGAAAGCCCGGATCCTTGTGGATACCTTGGACGAATAAAGTCTGCGGGATGGGTTTGGTGGTTTAAATCAGTGgttcctagtacccctggttgggaaacactggtctaaATGATGTCGCCACCAGACTGCCTGCTTCACATTGCcaactAAATGCACAGGCTGTGGACCTGGCTACAAAAGCCCACTGGATGCCATGAAGGGTCCACGTGAGGAGATTGTGTACCTGCCCTGCATTTATCGCAACACTGGAATCCAAAAACCAGACTACCTTGCCACTGTCGACGTGGACCCCAAGTCTCCTACTTATTGTCAGGTCATCCACAGACTGCCCATGCCCAACCTCAATGACGAGCTACACCACTCTGGTTGGAACGCCTGCAGCAGCTGTTTTGGCGACTCATCCAAGAAGCGCAACCGACTTATCCTGCCCTCGCTCATCTCCTCCCGGATCTACATAGTGGACACTGGGACAGACCCCCGCGCTCCACAGATGCACAAGATTGTGGAGCCCACAGATATCTTCTGGAAGACGGGCCTGGCCAACCCCCACACCACACACTGCCTGGGCAGTGGCCAGATTATGATCAGCAGCATAGGAGATCCATCTGGCAATGGAAAAGGTGGCTTTATCTTGCTGGATGGTAAAACGTTCGAGGTGGTTGGTAACTGGGAGCTGCCTGGTGAGGCGGCACCTTTTGGTTATGACTTCTGGTACCAGCCCCGACACAACGTCATGATGAGCACCGAATGGGGAGCGCCCAAAGCCCTCGCCTACGGTTTCAGCCTGGAACATGTCAAAGAAGGTCTCTATGGATCGAAGATCCACGTGTGGGACTGGACCACTCACAAGCGGCTACAGTCCCTGGACCTGGGGGAGGAGGGCGCCATTCCTCTGGAGATCCGCTTCCTCCATGATCCCGCCGCCACGGAGGGCTACGTCGGCTGTGCACTCCAAGGAACCGTCTTCCGTTTCTACAGGACACCAAAAGGAGAATGGGCTGCTGAGAAGGTTATCCACGTCCCCAGTAAGAAAGTGGAGGGATGGGCTTTGCCAGTGATgccaaGTCTGATCACAGATATTCTGATCTCCCTGGACGACCGCTTCCTATACTTCAGTAACTGGCTGCATGGAGACATACGACAGTATGACATCACAAACAGGAGGAACCCACGTCTGGCTGGCCAGCTCTTCTTGGGAGGGAGCATCCTAAACGATGGCCCTGTCAAAGTACTGGAGGACCCAGAGAATCAGAGCCAACCACCCCCACGCACAATCAAGGGGAAGAGGATCCCAGGGAGCCCCCAGATGTTGCAGCTCAGTCTGGATGGGAAGAGACTGTAcgtcaccacctctctctacagtggCTGGGACAAGCAGTTCTACCCGGAAATGATCAAGGAGGGTTCTGTTATGATGCAGATTGACGTGAACACAGCCAATGGTGGCCTCAAGGTGAATGAGAACTTCCTGGTCGACTTTGGGAAAGAGCCCAATGGCCCGGCCTTGGCCCACGAGCTACGATACCCTGGGGGAGACTGCACCTCTGACATCTGGCTGTAAAGTTACGCAGGAGGCCCTAGTTTTCCCCCTCTCATTCCCATCATACTTTACATAGACTTCATGTAACTCATATTAGTTGGGAACGGGTGGGGAAGGAGGCATACACTCGAGCCTCATGCCCGATAATGCTGCCTATTCATTCTCATGCCCGATAATGGTGCCTATTCATTCCATGCTGCTTTGCTTTAAATGCATAATTGTGCCTTAAGTCATTATCTCATCTATGAACCAAATGTTCTTTGTTACTTCCAATGCCAGTGGTGAAActgaggtttaaaaaaaataaacaaattctaACATATGGAATTCATAGAGTAACATCTGATGGCGACGTACTGTTTTTTAAGAATATGAAGACGTTCTCATTTTTCATCATTCCTTAAtggcctgagtgtgtgtgtgtgttcagcaggGTTGAATGAATCTGTATGTCTGGATTGTTTACTCTTTAATTTAATAGTAAACTAGATGGGTGTAGTGAAACATGTTTTACAGGGttagccatagtagtacagtgcCCCTATAGTAAGTTAGGGTTAAGTGACTTGCTCAAATGCACAACAGATTTTTTGCCTTGTCGGTGCAGGTAtttaaaccagcaacctttcagttagttactggcccaacgctctaactactacgCTAACTACATCTAACCACCAGTCTACCAAT

Function

GO:

id name namespace
GO:0008430 selenium binding molecular_function

KEGG:

id description
K17285 SELENBP1; methanethiol oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248789 lncRNA upstream 41016 4933832 ~ 4934075 (+) True G218307
TU248788 lncRNA upstream 45285 4929587 ~ 4929806 (+) True G218306
TU248762 lncRNA upstream 52942 4915148 ~ 4922149 (+) True G218286
TU248748 lncRNA upstream 81505 4893270 ~ 4893586 (+) True G218274
TU248730 lncRNA upstream 105529 4862592 ~ 4869562 (+) True G218259
TU248782 lncRNA downstream 5917 4989404 ~ 4991140 (+) True G218300
TU248807 lncRNA downstream 39774 5023261 ~ 5023608 (+) True G218322
TU248803 lncRNA downstream 41929 5025416 ~ 5026838 (+) True LOC110507709
TU248813 lncRNA downstream 59413 5042900 ~ 5043641 (+) False G218325
TU248815 lncRNA downstream 59413 5042900 ~ 5044159 (+) True G218325
XM_036966468.1 mRNA upstream 140503 4829858 ~ 4834588 (+) True LOC118944843
XM_036966442.1 mRNA upstream 205796 4764647 ~ 4769295 (+) False LOC118936613
XM_036966429.1 mRNA upstream 206037 4764647 ~ 4769054 (+) False LOC118936613
XM_036966467.1 mRNA upstream 206037 4765154 ~ 4769054 (+) False LOC118936613
XM_036966433.1 mRNA upstream 206123 4764647 ~ 4768968 (+) False LOC118936613
XM_036966519.1 mRNA downstream 1218 4984705 ~ 4996809 (+) False LOC118936614
XM_036966521.1 mRNA downstream 1220 4984707 ~ 4996820 (+) False LOC118936614
XM_036966512.1 mRNA downstream 1223 4984710 ~ 4999197 (+) False LOC118936614
XM_036966525.1 mRNA downstream 1225 4984712 ~ 4996804 (+) True LOC118936614
XM_036966546.1 mRNA downstream 15832 4999319 ~ 5017869 (+) True LOC110516306
TU248775 other upstream 13641 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 35197 4937097 ~ 4939894 (+) True G218309
TU248288 other upstream 522535 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 672235 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 832002 4142643 ~ 4143089 (+) True G217809
TU248804 other downstream 35207 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 341940 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 476605 5460092 ~ 5561271 (+) False G218465
TU249020 other downstream 549528 5533015 ~ 5626512 (+) False LOC110535491
TU249057 other downstream 560443 5543930 ~ 5633481 (+) False G218487

Expression Profile