RNA id: XM_036966525.1


Basic Information

Item Value
RNA id XM_036966525.1
length 2713
RNA type mRNA
GC content 0.56
exon number 13
gene id LOC118936614
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 4984705 ~ 4999197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgtcgCCTATGTATAATACACTGGTAGCATAgtgtaccctactctaccctattaCGCACTTTTGGATGTAGCTGAAATTTTACACGTTCTTCATTCAGCAATTTTCCATGTTTTACAACAATAACACTTATTGTGGAGTAGTTTGTCATAATGGACAAATATATTTTACACAGGCACTAAGCAGGCAGCCCTGGTCTGTCTGTCACCTCTCCAATAAGTTGTTCAGAGAACTCGGCACTTTGAGGGACTGAACGCATTCTAAATGGAGCAGAGATATTGGAGATAAAAAAAACTTAAATAGCTAACCATCCAATACAATTTTAAGTGGGAGTGTGGTGAGCGGCCGTGATGGGTGACACGGAGCTGGGTCTGTCTGCTGTACAGCCAGAGGAACTAGAACCGCAGAGCCCCTCcacagcctcctcctctccctcactctctctgccctcctccccttcctctggaTCCTACCACTATCAGCAGACCACCAGTCCCAGCCCCACTCACAGCGATGGTCCAGCCGCCTCCAGCCCACCCCTGGATGTCATCTCAGAGGGCGTGGGCGAGCTGACCCTGGTCATCGATCCCGAGGTGGCCAAGATGGCCTGCCAGGAGGTGCTGCAGAAGGTGAAGTTTCTCAAAGGCGAAAGTGAGGGGTCAGGTCTTGGGTCTGATGGTGGCAATAGCACAGACCAAACACTGGTCAACGGGACTGTACATACAGAGCCTATCAAGCCCCCAAAAATCCCCGGGGAGGAGGACTCTGAGGCACTGCCTCCAGGCTCGGTGAAAAGCGCGCGGCGGCGCCAGCGCCACAACCCCTCCAAGCAGTCGTGGCTGCTGCGGCTGTTTGAGTCCAAACTCTTCGACGTGTCAATGGCCATCTCCTATCTACACAACTCCAAGGAGCCGGGTGTGCAGGCCTACATCGGCAACCGTCTGTTCAGCTTCCGCCACGAGGAGGTGGACTTCTACCTGCCGCAGCTGCTCAACATGTACATCCACATGGACGAGGACGTGGGAGACGCCATCAAGCCCTACGTGGTGCACCGCTGCCGTCAGAGTATCTCCTTCTCGCTGCAGTGCGCCTGGCTGCTGGGCGCCTACTCCTCCGACATGCACATCTCCACACAGCGACACTCGCGCGGCACCAAGCTACGCAAACTCATCTTCTCCGACGAACTCAAACCAGCTGCAGTCCGTGCCCGCCAGCCACTGACGTTGGCCCCTTTCTGCCCACTTCCGACCGCTGCACCATCCCTGCACGGGCACGGCTTGGGCGGAGAGCACGGTCTGTCGCCTACTAAGCGCACGCATCAGCGCTCCAAGTCGGACGCCACGGTCAGCATCAGCCTGAGCAGCAACCTGAAGAGGACAGCGAGCAACCCCAAGGTGGAGAGCAACCAGGACGAGccGGCGCGTCTGGCACCGCAGAGAGAGTTCATCAAGTCCCTGATGGGTATTGGGAAGCGGCTGGCCACGCTGCCCACTAAGGAGCAGAAGACGTCCCGGCTCATCTCGGAGCTTTCGCTGCTCAACCACAAGCTGCCCGCCCGCGTCTGGCTGCCCACCGCCGCCTTCGACCACCACGTGGTGCGCGTCCCTCACACACAGGCTGTGGTGCTCAACTCCAAAGACAAGGCGCCGTACCTCATCTATGTGGAGGTTCTGGAGTGTGAGGACTTTGAGACGTCCAACGTTCCGGTGCGGATCTCCGAGACCAGGATCCGCAGCACGCGCTCAGTGGAGAACCTTCCGGACTGCGGCATCACGGCAGATCAGCGAGCCGGGGGCTTCTCAACGGTTCACAACTACGATGAGGATAACGAAGCCTGGTCTGTGGACGACATCGGGGATCTGCAGGTGGAGCTCCCAGAGTTCCACACCAACAGCTGTGACAACATCTCCCAGTTCTCAGTGGACAGCATCACCAGCCTGGACAGCAAGGAGCCCATCTTCATCGCTGCTGGAGACATCAGGCGGCGTCTCTCAGAGCAGCTAGCTCACACACCCACCACATTCAAACGGGACCCAGAGGACCCTTCAGCAGTGGCCCTCAAGGAGCCGTGGCAGGAGAAGGTTCAGCGGATAAGGGAGGGCTCCCCATATGGACACATCCCTACCTGGAGGTTGTTGTCAGTCATCGTCAAGTGTGGCGACGACCTTCGGCAAGAGCTCCTGGCCTCTCAAGTGCTGCAGCAGCTCCAGATCATCTGGGAACAGGAGCGCGTGCCTATCTGGATCAAACCCTACAAGATCCTGGTGATCTCCTCTGACAGCGGCATGATTGAACCCATAGTCAACGCAGTGTCCATCCACCAGGTGAAGAAACAGAGCCAGATGTCTCTGCTGGACTACTTCCTGCAGGAACACGGTACCCACACCACCGAGGCTTTTCTCACGGCCCAGCGCAACTTTGTCCAGAGCTGTGCAGGCTACTGTCTCATCTGCTACCTGCTGCAGGTCaaagacagACACAATGGCAACATCCTGTTGGACGCTGAGGGCCACATCATCCACATAGACTTTGGCTTCATTCTGTCCAGCTCGCCCCGCAACCTGGGCTTCGAGACCTCTGCTTTCAAGCTCACCAACGAGTTTGTAGACGTGATGGGAGgtctggatggagacatgtttaaTTACTATAagatgctctgtctctctctaggtgatgggaggtctggatggagacatgtttaaTTACTATAaga

Function

GO:

id name namespace
GO:0060872 semicircular canal development biological_process
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0004430 1-phosphatidylinositol 4-kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248789 lncRNA upstream 50637 4933832 ~ 4934075 (+) True G218307
TU248788 lncRNA upstream 54906 4929587 ~ 4929806 (+) True G218306
TU248762 lncRNA upstream 62563 4915148 ~ 4922149 (+) True G218286
TU248748 lncRNA upstream 91126 4893270 ~ 4893586 (+) True G218274
TU248730 lncRNA upstream 115150 4862592 ~ 4869562 (+) True G218259
TU248807 lncRNA downstream 26457 5023261 ~ 5023608 (+) True G218322
TU248803 lncRNA downstream 28612 5025416 ~ 5026838 (+) True LOC110507709
TU248813 lncRNA downstream 46096 5042900 ~ 5043641 (+) False G218325
TU248815 lncRNA downstream 46096 5042900 ~ 5044159 (+) True G218325
TU248832 lncRNA downstream 81308 5078112 ~ 5080045 (+) True G218338
XM_021587829.2 mRNA upstream 1225 4975047 ~ 4983487 (+) False LOC110507681
XM_021587838.2 mRNA upstream 1225 4975091 ~ 4983487 (+) True LOC110507681
XM_036966468.1 mRNA upstream 150124 4829858 ~ 4834588 (+) True LOC118944843
XM_036966442.1 mRNA upstream 215417 4764647 ~ 4769295 (+) False LOC118936613
XM_036966546.1 mRNA downstream 2515 4999319 ~ 5017869 (+) True LOC110516306
XM_036966556.1 mRNA downstream 21785 5018589 ~ 5026840 (+) False LOC110507709
XM_036966562.1 mRNA downstream 30989 5027793 ~ 5039155 (+) False LOC110507710
XM_036966571.1 mRNA downstream 32785 5029589 ~ 5037972 (+) False LOC110507710
XM_036966568.1 mRNA downstream 32837 5029641 ~ 5037972 (+) True LOC110507710
TU248775 other upstream 23262 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 44818 4937097 ~ 4939894 (+) True G218309
TU248288 other upstream 532156 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 681856 4297556 ~ 4302856 (+) False G217870
TU248166 other upstream 841623 4142643 ~ 4143089 (+) True G217809
TU248804 other downstream 21890 5018694 ~ 5021873 (+) False LOC110507709
TU248783 other downstream 328623 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 463288 5460092 ~ 5561271 (+) False G218465
TU249020 other downstream 536211 5533015 ~ 5626512 (+) False LOC110535491
TU249057 other downstream 547126 5543930 ~ 5633481 (+) False G218487

Expression Profile