RNA id: XM_036966562.1


Basic Information

Item Value
RNA id XM_036966562.1
length 2844
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110507710
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5027793 ~ 5039155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGGACCTATACGGAGCAGGGGGACCAGTACATGCTAAATGGGAGTCCAGAGGGGGTGAAGGCTGCTTCCTACATCCAGGACATGGAGCTGAGGGAGGAATGGCAGGATGAGGAGTTCCCCAGACCTCTTCCTGAAGATTCACATAGTCCTGAGACCCAAGGAGAACATGCAGAGAGACCAGCTCCACCCACAAGCCTGGCCCTGTCAGAAAAACCCATAAGGAAGAAGCGTCTGGTGGCGCCCACCCTCAGCCTGACCCTGTCCCGTACCGACTCAGCGGACCGCAGTGTGAAGTCAGGGGACACCGGCTACTCTGCCGCCGCCCTCTCACCCGACGAAGATGACACGGAGCTGGACATCAACCTGGAGGCCCTGGAGACGCCCTCGGACAGCGAGTCCTGCAACTTCCCTGACAGCATGCACGAACTGGagtgggaggATGACCTGCCACGGCTGGGCCGGGGGGAGGATGGTGTCTCAGGCACCACGGTGATGGAGCAGGCAGAGATGGGCTCGATGGAGCTAGACCAGGTGGACAACAGGGGGAGCCGCTGGAGAAGGTTCTGCGTCGCAGGACAGGAGTACCACGTCAACATGAGTGTCCTGGAGCCATACCTCCAGGTGCTCTCTCACGGAGGTTATTACGGGGAGGCTATGAACGCCATCATCACGTTCTCCTCCTGTTACCTACCAGAGAACACGGTGGAGAACTATGAGTACGTCATGGACAATCTCTTCAGGTACATAGTGGGGACGCTGGACCTGATGGTGTCAGAAGGCTATGTCATGGTGTACCTGTGCAGCATGGCTCCCAGGAATAAGATGCCCGCCATCAAATGGCTGCGACAGTGTTACACCTCCATTGACAGAAGGTTGAGGAAGGATCTGAAGGGGCTCTTTGTGGTCCACCCTGCCTGGTACATCAAAGCACTCATCACTGTCGTCAAGCCTTTCATCAGTGAGAAGTTCAGCCGGAAGATCCGCTTCATTCACAGCCTGCAGGAGCTGTCTGAGTACATCCCCATGGAACGCCTGCAGATTCCCGACAGCATCCGAGAGTATGATGCGAGGATGAACGGGTGAGGAACATATCGCGGGAAGCCAAAGAGCGGACATTGAGAGTGGATAGGCGAAGGAGGGGAAGACAGCAGACGACCAGAAACTATGGGCTGAATTACCATGAAAGTTCAAAAGTTAACTAGTCCAAATGTCACCCTGCAGGTATGCTTGGACGTGCAGCACTTTTGTTGTACAGAAAATGAAAGACTTTGTGTACAGACACACCTTTAATTTATTCATCGTTGAATGTAATGTCACTAAAGAAGTTCACTTCCCCAAGCCACTGGCTTTGCAACAGTTTCATAACTGCCCCTATTTTGTGGTACTTGAATGCAATCCTATCATATGTATTGATGCCAGAGTGATTTGTGGGACCTGTCGTCAAGGAGCGACCTACAGTCAGTTTGAACACAACATAACACTTAGATGAAAGGTCCAGATGGTTTTCTGTTACAGTTACCTTCACTGGAGCTCACATTGACTGCTGCTTTATCTGTTAGGGCTTACTGCACTCTAGTGCCAAGTACAACACTTTTGACTGTCAGGTTGTCAGGGAGATGGGATGTCACCTTTTAATGTTTACTAAAATGTGATTGATGCACAACAAATACTTTAGGTTAAGATGGAGACAAAGTCTATTTTTATAAAATAAATCAGAATTTACATCATGACATGAATTCTGACGTATTTTACTGTATTATTCTGACCTTGTAAACCTAAGGCTTTTTATAGCCTACCCTCAGAGCAAATATTTATGTAAGAAAACTCTTGAACAACCTGTACTTTTAGAATGTTCTAACCATGCTTTCTATAGCTGAATGATCTTCTCACTTTAAGACATTTGTTTTAGAGCACTGCTTACCACGTGTAAGGGCTTTTACACTATTTTAAAGGAAGGGGTGTCACCATGGAAACGCTGCAGGCATTCAGGAAATGGCAGCCACAGGAAGTGAGGAAGAAGAATACTGCTGCCTACATTTACTGTAACTCGTACACAGGAAACAGTGACATGTCCATTAATTAGGGATGATGAAGAATATTCATCTGAAAATGAAAAACATTTTTCTGAAAAAGGGGAGCTATTGAATGTATTGTTCTGTTATAGTCCTTTATGCTGactaaaaaacatgagctggcgcacacccagaaaaaAATGTCTGTGTGGAGGTGCAGACTAACAACGAAAAAATTATAAGCTATCAAAATAAAGTCACatactccatatataaactcccagtaatttattgggtatttaccaacgtttcgacatcactgtgccttcttcagggtaatgtcatgagTACCTCAAACAGGTTATGTAGACAAATagtgcaattagtgcaaccaatgacaattCTACCACAGGAAATTGTGGGTTTTTCAATGTTACTGCTACTGAATTATACCACCATATTGGGGATGTTTCTAAATCTACAGAAGTCTTCAAAAGACTCCTTTAAACTGGTGGTAGTTAACAGATCTTAAATACATGAGACGATGATGCATTCAGTATTAAATCAGATTAGTATTCAGTAAGATTATATGGTGGTGGTTGGTATCGCTCATGTCAGCTGGGTGTTCTGAAATTCTCTGAATTGTCTTGCATTGTGGAGGAGGAAACTGAATGGCCTCTGAGATAGATATGGTGTCCTTCGTTAACACGACTGGAGTCTGACTGCTTGTTTTTCAGGGATTATTTTGTACCCCTCTGCATTCACATCTTTGTCCCGGTGGTCTGACTGCTTGCCAGTTGTTCATGTAAATAAAGTTGTCATCATGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248803 lncRNA upstream 955 5025416 ~ 5026838 (+) True LOC110507709
TU248807 lncRNA upstream 4185 5023261 ~ 5023608 (+) True G218322
TU248782 lncRNA upstream 36653 4989404 ~ 4991140 (+) True G218300
TU248789 lncRNA upstream 93718 4933832 ~ 4934075 (+) True G218307
TU248788 lncRNA upstream 97987 4929587 ~ 4929806 (+) True G218306
TU248813 lncRNA downstream 3745 5042900 ~ 5043641 (+) False G218325
TU248815 lncRNA downstream 3745 5042900 ~ 5044159 (+) True G218325
TU248832 lncRNA downstream 38957 5078112 ~ 5080045 (+) True G218338
TU248834 lncRNA downstream 39858 5079013 ~ 5081026 (+) True G218339
TU248843 lncRNA downstream 67648 5106803 ~ 5107019 (+) True G218348
XM_036966556.1 mRNA upstream 953 5018589 ~ 5026840 (+) False LOC110507709
XM_036966546.1 mRNA upstream 9924 4999319 ~ 5017869 (+) True LOC110516306
XM_036966512.1 mRNA upstream 28596 4984710 ~ 4999197 (+) False LOC118936614
XM_036966521.1 mRNA upstream 30973 4984707 ~ 4996820 (+) False LOC118936614
XM_036966519.1 mRNA upstream 30984 4984705 ~ 4996809 (+) False LOC118936614
XM_036966585.1 mRNA downstream 17382 5056537 ~ 5150464 (+) True LOC110520779
XM_036966600.1 mRNA downstream 274477 5313632 ~ 5318428 (+) True zgc:153896
XM_036966607.1 mRNA downstream 280183 5319338 ~ 5323900 (+) False LOC110535282
XM_036966609.1 mRNA downstream 280183 5319338 ~ 5323900 (+) False LOC110535282
XM_036966616.1 mRNA downstream 280183 5319338 ~ 5323900 (+) False LOC110535282
TU248804 other upstream 5920 5018694 ~ 5021873 (+) False LOC110507709
TU248775 other upstream 66343 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 87899 4937097 ~ 4939894 (+) True G218309
TU248288 other upstream 575237 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 724937 4297556 ~ 4302856 (+) False G217870
TU248783 other downstream 286272 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 420937 5460092 ~ 5561271 (+) False G218465
TU249020 other downstream 493860 5533015 ~ 5626512 (+) False LOC110535491
TU249057 other downstream 504775 5543930 ~ 5633481 (+) False G218487
TU249058 other downstream 504775 5543930 ~ 5633481 (+) False G218487

Expression Profile