RNA id: XM_036966568.1


Basic Information

Item Value
RNA id XM_036966568.1
length 1948
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110507710
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5027793 ~ 5039155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCATTGAGATACTCAACTATTTATCTACGGATCTGCTCATTTTGATGTGTTTACAAGTTGCGATGAGTGATAGATCAGAAAGTTCTCACTCACTCAGGTGTGGTGAACGTGTCACCAACCGAGCACGTACAAAGCCCTCTGATTGGCTAAGCTAATGTATTGTTTGCTGTGTGGTTGGCTCGTCAGAACACTGCACTTGTGCGAATGTCGGAGTGTTTACAATTGACGACTTTTAAATGACTTATCTTCttgataaacatttttttttactcatctttTAATCATGATGTCTGCATGAGTGCGCGTTTATACAGAGGAAAGGGTGAAAGGAGTCCAGAGGGGGTGAAGGCTGCTTCCTACATCCAGGACATGGAGCTGAGGGAGGAATGGCAGGATGAGGAGTTCCCCAGACCTCTTCCTGAAGATTCACATAGTCCTGAGACCCAAGGAGAACATGCAGAGAGACCAGCTCCACCCACAAGCCTGGCCCTGTCAGAAAAACCCATAAGGAAGAAGCGTCTGGTGGCGCCCACCCTCAGCCTGACCCTGTCCCGTACCGACTCAGCGGACCGCAGTGTGAAGTCAGGGGACACCGGCTACTCTGCCGCCGCCCTCTCACCCGACGAAGATGACACGGAGCTGGACATCAACCTGGAGGCCCTGGAGACGCCCTCGGACAGCGAGTCCTGCAACTTCCCTGACAGCATGCACGAACTGGagtgggaggATGACCTGCCACGGCTGGGCCGGGGGGAGGATGGTGTCTCAGGCACCACGGTGATGGAGCAGGCAGAGATGGGCTCGATGGAGCTAGACCAGGTGGACAACAGGGGGAGCCGCTGGAGAAGGTTCTGCGTCGCAGGACAGGAGTACCACGTCAACATGAGTGTCCTGGAGCCATACCTCCAGGTGCTCTCTCACGGAGGTTATTACGGGGAGGCTATGAACGCCATCATCACGTTCTCCTCCTGTTACCTACCAGAGAACACGGTGGAGAACTATGAGTACGTCATGGACAATCTCTTCAGGTACATAGTGGGGACGCTGGACCTGATGGTGTCAGAAGGCTATGTCATGGTGTACCTGTGCAGCATGGCTCCCAGGAATAAGATGCCCGCCATCAAATGGCTGCGACAGTGTTACACCTCCATTGACAGAAGGTTGAGGAAGGATCTGAAGGGGCTCTTTGTGGTCCACCCTGCCTGGTACATCAAAGCACTCATCACTGTCGTCAAGCCTTTCATCAGTGAGAAGTTCAGCCGGAAGATCCGCTTCATTCACAGCCTGCAGGAGCTGTCTGAGTACATCCCCATGGAACGCCTGCAGATTCCCGACAGCATCCGAGAGTATGATGCGAGGATGAACGGGTGAGGAACATATCGCGGGAAGCCAAAGAGCGGACATTGAGAGTGGATAGGCGAAGGAGGGGAAGACAGCAGACGACCAGAAACTATGGGCTGAATTACCATGAAAGTTCAAAAGTTAACTAGTCCAAATGTCACCCTGCAGGTATGCTTGGACGTGCAGCACTTTTGTTGTACAGAAAATGAAAGACTTTGTGTACAGACACACCTTTAATTTATTCATCGTTGAATGTAATGTCACTAAAGAAGTTCACTTCCCCAAGCCACTGGCTTTGCAACAGTTTCATAACTGCCCCTATTTTGTGGTACTTGAATGCAATCCTATCATATGTATTGATGCCAGAGTGATTTGTGGGACCTGTCGTCAAGGAGCGACCTACAGTCAGTTTGAACACAACATAACACTTAGATGAAAGGTCCAGATGGTTTTCTGTTACAGTTACCTTCACTGGAGCTCACATTGACTGCTGCTTTATCTGTTAGGGCTTACTGCACTCTAGTGCCAAGTACAACACTTTTGACTGTCAGGTTGTCAGGGAGATGGGATGTCACCTTTTAATGTTTACTAAAATGTGATTGATG

Function

GO: NA

KEGG:

id description
K18448 BNIP2; BCL2/adenovirus E1B 19 kDa protein-interacting protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248803 lncRNA upstream 2803 5025416 ~ 5026838 (+) True LOC110507709
TU248807 lncRNA upstream 6033 5023261 ~ 5023608 (+) True G218322
TU248782 lncRNA upstream 38501 4989404 ~ 4991140 (+) True G218300
TU248789 lncRNA upstream 95566 4933832 ~ 4934075 (+) True G218307
TU248788 lncRNA upstream 99835 4929587 ~ 4929806 (+) True G218306
TU248813 lncRNA downstream 4928 5042900 ~ 5043641 (+) False G218325
TU248815 lncRNA downstream 4928 5042900 ~ 5044159 (+) True G218325
TU248832 lncRNA downstream 40140 5078112 ~ 5080045 (+) True G218338
TU248834 lncRNA downstream 41041 5079013 ~ 5081026 (+) True G218339
TU248843 lncRNA downstream 68831 5106803 ~ 5107019 (+) True G218348
XM_036966556.1 mRNA upstream 2801 5018589 ~ 5026840 (+) False LOC110507709
XM_036966546.1 mRNA upstream 11772 4999319 ~ 5017869 (+) True LOC110516306
XM_036966512.1 mRNA upstream 30444 4984710 ~ 4999197 (+) False LOC118936614
XM_036966521.1 mRNA upstream 32821 4984707 ~ 4996820 (+) False LOC118936614
XM_036966585.1 mRNA downstream 18565 5056537 ~ 5150464 (+) True LOC110520779
XM_036966600.1 mRNA downstream 275660 5313632 ~ 5318428 (+) True zgc:153896
XM_036966607.1 mRNA downstream 281366 5319338 ~ 5323900 (+) False LOC110535282
XM_036966609.1 mRNA downstream 281366 5319338 ~ 5323900 (+) False LOC110535282
XM_036966616.1 mRNA downstream 281366 5319338 ~ 5323900 (+) False LOC110535282
TU248804 other upstream 7768 5018694 ~ 5021873 (+) False LOC110507709
TU248775 other upstream 68191 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 89747 4937097 ~ 4939894 (+) True G218309
TU248288 other upstream 577085 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 726785 4297556 ~ 4302856 (+) False G217870
TU248783 other downstream 287455 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 422120 5460092 ~ 5561271 (+) False G218465
TU249020 other downstream 495043 5533015 ~ 5626512 (+) False LOC110535491
TU249057 other downstream 505958 5543930 ~ 5633481 (+) False G218487
TU249058 other downstream 505958 5543930 ~ 5633481 (+) False G218487

Expression Profile