RNA id: XM_036966609.1


Basic Information

Item Value
RNA id XM_036966609.1
length 2597
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110535282
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5301374 ~ 5324765 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacatgtattgtgtgtgtaccattcagagggtgaatggcagGACAAAATAttgagtgcctttgaacgggtatgGTGGTAGCTGCGCTTGGCGCACCTGTTCTTCgtgttttgtacaatcagtgtataTTTTTCACATTGATGCCGTTTATTTTTGTCATCGCCAAGGTTATTGTAGGGTTAAGTGGTGAATTGAAATTAAAACAGCAAGGGTGATGAATAGGCTACGGGCTATTGCCTAATGTAAATTATAAGATTATGAAACCAGCCATGATGAGTGGCTACACTTGTTGCGGTCATGTGACGAAGCATTAACGGGTTAGGTCAAATGGAGAGTGAGCGCGCCCTGCATTCTATGTGACGTTAAACTGCTGTACAATCACTTCAGTTTTGGATCCGTGCGTGTCTAGGTTAATCAGCCTAAATCACAACTAGTCTCTGATGTTTTAAGCTATGGCTGAATGTTTTGGGAACGACATAgctatatatatattctacaatTGGGTTAATTCTTAGAATAAAGAAAAAATGTTACATTTCGTCTTGCAAGATGTCTCAAACAACACGGAGCAAAACACAACAACGCCTGAGGACTGGACTGTTGTGTACTTTGCAGTCAGATGGATCCAGATGACTATGGCAGTGCTGAGCATTGTCGGTTCAGGTTCCATAATTGTTTATGCAACTTTCCAACACCTTATAAGGACACCTGAGACTCCAAAACAATGGCCAATACCACCTCCTCTGCAGATCCAGCCATTGTTCTTACTGAGTGTGACAGACTTGCTGCTGGCAGTCAGCTGGCTGGTAGGAGCAGTACTGTTCACTCAGGACTGTGATAGCCATGCCACCTGCTACAACCTACACATCGTTGAACAGATCCTGTATATGACCTCGTTCTTCTACACATTGAACTATGTATGGACCCTGTACTCTGGGCTAAATAACAGATTCTACAGTAGCCTTCATGGATACCCAGCCCAATGCGCCACCAAACTGAGAAGTTTCAGCAAGATTGCTGCAGTCCTGTCATGTGTCCTCCCCGTGCTGCTGATGCTGCCAGTGTTTGTAACAGGAAACATGGACCACTGTTACACAAACTTCAGCCAGCCTTACAAGTGTCTTCTAATGCACACGGAGGCACTTTTCATGTCCACTGACTTGAGCAAGATGGAGGTGGACTCAGCTTGTCGCCTGGGACATATGTACAGTATTGCTGTCTTCCTGGCAGTGTTCCTCCTCACCTTTGTTGGCATTGTGGTGCTCATGGGAAAAGCCCGCACTGTTTACAGACGTTGTGTGAGTTCTAGCGGTTTCCTCGGCGACAGGCAGTGGGCGTCGCTTCGTGTTCTGGACCGACACATGctcctctacccctctgtcttcttcttctGTTGGGGCCCAGTGTTCCTGGCAGCCATGATTCTGTACAGCCCCAAATCAGTGGAGGGAGTTGTGGGCGTCATTCTCTACATCTTACAGGCCTTCACCTCATCCTCTCAAGGCCTTCTGAACTGTGTGGTGTACGGctggacacagacacacttcCGCTCAGCTAGCAAAGATGCTCTAAGGGACATGGACACCCAGACGCCACTTCTGAGATCTCAGAAGAAAGGCTATAAAACTCTATGGTCAACACCATCCCCCAAATCAGATGATATAGAAGGATCTGGTATTCTACCGACACCACATTAACTTACTATGGTGGTTGTGACACTGGCAAAAGAAATGAAACAAAGCCTTTTGTGCCAGACTGGGAGTGACGGTTTGGTTTTGAATCTTGGGGACAGTACCTTGGGAAGCACCTGTTATACCAATGAAGCAAGAACACCCTCGGCTGTACACAAGGGACAGCAGGGTCCAACCAGACAGAGGCTGAACTGCTGAGGCGTAAAAAAGGGAAGAACCAGGGAATTTACAAGGAAAGGAAGAGCAGCTCTGAAACAGGATCTGAGAGCTCTGTACTTTCATAGGAATCAGAGTCACTTGTTTTGACTGCATCGCTCGTGCAAACATTGTCTCTACATTAGTGTTTAGAATTTCCCACAGTAGTTGGGGACAGCCGAGGATATTTGTGAAAGGCTTTGTAACTGACTGGCATGTCTTTGATTTAGAGGGGCCCTGATTGAGCCCAACCGTGTGGAAACAGTGAGCAGCCTGTCACTTTTCATCTTGATAGAACAAAGGCCCTCCATTCACAGAGATGCTGCTTGACGTACGAGTTTGGCCCGTGGTGTTGTGTGATGGTCGTAGATACGCAAGTGTGTGCAATGTTTAGTTTTCGCCCTGCATGGGCTTGGTCACAGAAATGTGACTGTAGGTTTATGCTCACTCCTTGAGTTCAATTCTAAACTTTATCAAAGGGGACAATTATTGCCTTGCATGAGGCATGAGTTACAGGATAAATACATCACCACAACATACAATTTCTTTTTTTCTGAGATGCAAATGAAACTGAATGAAAAGAATGTGAATTTCCGGTCTGTCAATGCATTGGACTTTATTTCTGTTTAACTCAATCCATCAATATGAAATGGGCATTTCAGCTCAAATATAGTAACTGCTGCAGCCTCATCAAAACAATAAAATATTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248890 lncRNA upstream 100079 5218731 ~ 5219259 (+) True G218395
TU248885 lncRNA upstream 108017 5211074 ~ 5211321 (+) True G218390
TU248884 lncRNA upstream 109982 5208904 ~ 5209356 (+) True G218389
TU248883 lncRNA upstream 110492 5208558 ~ 5208846 (+) True G218388
TU248882 lncRNA upstream 112056 5207000 ~ 5207282 (+) True G218387
TU248932 lncRNA downstream 4066 5327966 ~ 5328597 (+) True G218436
TU248780 lncRNA downstream 4832 5328732 ~ 5330211 (+) True G218298
TU248779 lncRNA downstream 6416 5330316 ~ 5330558 (+) True G218297
TU248933 lncRNA downstream 6803 5330703 ~ 5331486 (+) True G218437
TU248946 lncRNA downstream 23626 5347526 ~ 5349161 (+) True G218441
XM_036966600.1 mRNA upstream 910 5313632 ~ 5318428 (+) True zgc:153896
XM_036966585.1 mRNA upstream 168874 5056537 ~ 5150464 (+) True LOC110520779
XM_036966562.1 mRNA upstream 280183 5027793 ~ 5039155 (+) False LOC110507710
XM_036966645.1 mRNA downstream 43732 5367632 ~ 5371403 (+) True LOC110535312
XM_036966663.1 mRNA downstream 116195 5440095 ~ 5454489 (+) False LOC110534114
XM_036966670.1 mRNA downstream 116195 5440095 ~ 5454489 (+) False LOC110534114
XM_036966676.1 mRNA downstream 116195 5440095 ~ 5454489 (+) False LOC110534114
XM_036966682.1 mRNA downstream 116196 5440096 ~ 5454489 (+) True LOC110534114
TU248804 other upstream 297465 5018694 ~ 5021873 (+) False LOC110507709
TU248775 other upstream 357888 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 379444 4937097 ~ 4939894 (+) True G218309
TU248288 other upstream 866782 4451754 ~ 4452556 (+) True G217896
TU248238 other upstream 1016482 4297556 ~ 4302856 (+) False G217870
TU248783 other downstream 1527 5325427 ~ 5326009 (+) True G218301
TU249003 other downstream 136192 5460092 ~ 5561271 (+) False G218465
TU249020 other downstream 209115 5533015 ~ 5626512 (+) False LOC110535491
TU249057 other downstream 220030 5543930 ~ 5633481 (+) False G218487
TU249058 other downstream 220030 5543930 ~ 5633481 (+) False G218487

Expression Profile