RNA id: XM_036966645.1


Basic Information

Item Value
RNA id XM_036966645.1
length 3472
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110535312
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5367632 ~ 5371403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaatgtttgtactgatgactgagtaatgtttgtaccgatgactgagtaatgtttgtactgatgactgagtaatgtttgtactgatgactgagtaatgtttgtaccgatgactgagtaatgtttgaaTGGTTTTAGACTAGTTGTTTTGGTTTGACTGCTTTACCAATGAAAATGGTTGGCTACTGGCAGCTCAATGCAGTATGAACAAAACAAGCTCAACCACAGTTTAATTGTTTTCTAGGCCGATATTTATTATTGTCACGTTTTTTGTGTTGTTTATCAGACGATTTATTTTGGGGCTGTTATAATCAAGGATACTCATTTGTTAatatttagttgttttttttatcaCTTTTTTTTTATCACTTACCATTGATGTGTCCCAAGAAActtgaaaaaaatgtatcatcAGTCATTCTGTTCCAGTTCCTAATATTGTTCTATAGAAACGGTTATTTTATACACAATGTAGCCGATTTATTGTCCATAGTGTTTCCTGGTTTAGTTAAGTTTTAAGTGAGAATATGGAGCATACTATTGGTAGCGTATTAACAAGCTTATTTCCATTAGGGGGTAGATTATGACCTGGTGTAGCAGTCCATTTTAGAGAGTGTATTCTTCATTAGATTATGGTTAATCATTGTCCGATTTCTTATCAGATAAAATCTTTACATACAGTGTATAAAAGTTATGTTCCTCATCACATCTAATAGGATCACTTCTTATCAGCATACAGTCATAGTTACTGGTTGGTTTGTAGTTCCCCTTGATTCAATTAGCTATGCTGTTTTGCCTTTTTAAAGTCCCATGAACTATTACATACCTTCTGTGACAAGAGACAATATGGGAGTGACAGATATGAGGTAAGGAAAGTGAAACTTAAGGAAAGATAAACTCATACATTGTAATAATACTAGCCTCACTCAGTCAGTCCCATGACTGCTGAAACTCTTCACTAAGAAATACATCACATGCCAGACAGAGCACACCATGGGCGTCCAGGGATTGACCAGCTTTATGGAGGAGAATGGAAACATTTTAAAAGATGTTCACCTCAGAAACAGCAAGTTGATCATCGATGGTAGTAATCTGTTCAACTTGCTTTATTTTGACTCACGTTTGGATCAGAGTCATGGAGGGGATTATGATGCTTTTGAGGACCAGGTCTGCAAGTTCTTTAAGGCTCTGAGAGACTGCGACATTGACCCCTTTGTGATTGTAGATGGGGGCTCCGACTACACCGACAAAAAGtttgaaacaaaaaaaaacagagctcTATCAAGGATCAACAGAGCGAAAAGCTTGTCCATGGGGCTTCAGGGGAGCGGTGGTATATTACCAACCCTCATCAAACATGTCTTCAAACAGGTCCTCATCAGCCTGAATGTGCCGTACGCACAGTGCATTTGTGAGGCAGACCAAGATATAGCCTCCCTGGCTCGAAGTTGGAACTGTCCAGTGCTGTCCAATGACAGTGACTTTTATATCTTTGACATCCAGGCAGGATTTCTGCCCACCTCCCATTTTCACTGGCAGAGAGTGTCTATGCAACGCGGGAGCTCTATAAGATACATTCCCTGCAAGCAGTACACCACAACAAGCTTCTGCAGACACTTCAACATCAACAGACAGGTTCTCCCAGTCTTCGCTGCCATGTTAGGAAACGACTACGTCAAGTTGCATAACATGGGTGTTTCCCTCAGGTGGGAAGAATACACGTCAATGGAAGGAAGGTTTGCCCGCTTCGACGGCTTGCTGAATTGGCTGGCCCGCTTCCATGGGCAGAAGGATGCCTTGGACTCCGTGCTCAGGCTCATCAGTCATTGTAACAACAGACAGAAAACAGGTGCTGTCCTCCATGGCCTCTCCCTGGGCATAGAAGAGTACCATCTTCCCCCTAGTTGCCTGGAGCGGTTCTTCAACGATGGAGTGGGACCAGGGCCCGGCCGTCTCCCAGAGCCTCTGAGGGTCCTTCCAGACTGGACCCTGCTGCCATTGATGGAAGGTAGACTTCCCTCCTGCATGGTAGACGTGCTGCTGCTGGGAAGGATGATGCAGGGTGCCCAGGTGGAAGATCCCAGCTTGCCATGTGGGAACAACACCTCTCGGTCCATACGACAGGTACTCTACGGGCTGCTGCTGGGTGGGAGGAGGGCAGACCACAGCCGTCAGAGACCCCCAGTGGATGAAGTGGAGGAGTATTACAGGGAAGGCAAGAGCCTGACCAGCAGCATGGTTGAAGCCATCCTTCCCAGTGCTGCAGAACATATACAGCTAGACACTCTGCATCAGGCTCCAAGGTTAGTGCAGCTTAAGGTGTTTTTGGAGACACTTGGTGTGTCCCAGTCCACTTTGAGCGGTGTCCCGCCTCATCTGCGTCTTCCTGTGGCTGTCACCTGCTACTGGCTGAGGCACGCCCATTCCCCTCCAGAACTCCCTGTCCTGCAGGCCCTGCTACTAGGATTGGTGTATGGAGAGCTctgtagaaagagaaagagccaAAGAGGGTTTATGGAGGGACCAGTGTTGGAGAGGCTGAGAGGGCTGATTCAGAGAGGTAGAAGGAGCCTAGACCTGGGTGTGGCCCACGCCTACAGCCAGTGGCAGTGCTGCCTGAAAGAAAGCCTTCACCTCAACCAACTGCTGTGCTTCCCTCTAGACGAGCCTCAGTGTGCCTGGCTGTACAAGGGCACTCTGGTGCACCAGCTTGTGACCAAACTGAGAGGGGGGTTAACCCCGGATTCTCTCCTGATGGGAGACCTTGGCTCTGgacagctgtatagggccatgCTGGGAGCCATACTCAACTCCCATGATTCTCATGAGGCAGCTGTCATCCCATTTGTGTCTGGGCTGCAGAGGGCCACACCTCCATCCTTGACACAGCCACTGGACGATCTGACGGCCCATCTACACATTCTGGCTCTggaatatgatgatgatgatggtgctgGAGGTGGGAGCAAGGCCAAGTCAGAGGACGATCTGGGTTGGACTTTGGTCTCAGTGCGGACCCGGCACAAGAGCAAGGACAGATTCAACCGAGCTAGGAATCCAGAATTCTCCCGGAAGCAGGGGCGGATCGGCTGGGAATAGGGAGGGACCATTATATAACGGTTTAGATATATAGACGTTCTGCTCAACTCTTCAATGTTTTTATTGTTCTTGTGTGTACCTATTATGACttaatttacattttattagCATGAACTATAATAGAAGTTATGATAAGTTTGACTTTATTTaatatgtttttatttctttGCTCTCTACTGTAAAAACTTATTTTGGTCTTTGAAAATAGCTCTATAAATCCCATTTATTGTTACGATTAtattactgctgctcttgaaaTATTTTATCATCAAAatgaaaaataacatttaaaccAGCTATTCTTGAGAATGATTGGCTATACACACTAAAGTATATCTCTGCTTTGACAGTATATTTTAAATTAAATTCTTATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248946 lncRNA upstream 18471 5347526 ~ 5349161 (+) True G218441
TU248933 lncRNA upstream 36146 5330703 ~ 5331486 (+) True G218437
TU248779 lncRNA upstream 37074 5330316 ~ 5330558 (+) True G218297
TU248780 lncRNA upstream 37421 5328732 ~ 5330211 (+) True G218298
TU248932 lncRNA upstream 39035 5327966 ~ 5328597 (+) True G218436
TU248983 lncRNA downstream 48263 5419666 ~ 5420782 (+) True G218455
TU248997 lncRNA downstream 85949 5457352 ~ 5558991 (+) False G218463
TU248992 lncRNA downstream 86123 5457526 ~ 5558991 (+) False G218463
TU248994 lncRNA downstream 86123 5457526 ~ 5559071 (+) False G218463
TU248993 lncRNA downstream 86355 5457758 ~ 5558991 (+) True G218463
XM_036966607.1 mRNA upstream 43732 5319338 ~ 5323900 (+) False LOC110535282
XM_036966609.1 mRNA upstream 43732 5319338 ~ 5323900 (+) False LOC110535282
XM_036966616.1 mRNA upstream 43732 5319338 ~ 5323900 (+) False LOC110535282
XM_036966600.1 mRNA upstream 49204 5313632 ~ 5318428 (+) True zgc:153896
XM_036966585.1 mRNA upstream 217168 5056537 ~ 5150464 (+) True LOC110520779
XM_036966663.1 mRNA downstream 68692 5440095 ~ 5454489 (+) False LOC110534114
XM_036966670.1 mRNA downstream 68692 5440095 ~ 5454489 (+) False LOC110534114
XM_036966676.1 mRNA downstream 68692 5440095 ~ 5454489 (+) False LOC110534114
XM_036966682.1 mRNA downstream 68693 5440096 ~ 5454489 (+) True LOC110534114
XR_005040249.1 mRNA downstream 127141 5498544 ~ 5503473 (+) True LOC118944859
TU248783 other upstream 41623 5325427 ~ 5326009 (+) True G218301
TU248804 other upstream 345759 5018694 ~ 5021873 (+) False LOC110507709
TU248775 other upstream 406182 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 427738 4937097 ~ 4939894 (+) True G218309
TU248288 other upstream 915076 4451754 ~ 4452556 (+) True G217896
TU249003 other downstream 88689 5460092 ~ 5561271 (+) False G218465
TU249020 other downstream 161612 5533015 ~ 5626512 (+) False LOC110535491
TU249057 other downstream 172527 5543930 ~ 5633481 (+) False G218487
TU249058 other downstream 172527 5543930 ~ 5633481 (+) False G218487
TU249013 other downstream 254304 5625707 ~ 5626578 (+) False LOC110535491

Expression Profile