RNA id: XR_005040245.1


Basic Information

Item Value
RNA id XR_005040245.1
length 8962
RNA type mRNA
GC content 0.52
exon number 40
gene id LOC110517595
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5457526 ~ 5492523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGTTTCCCGGTAGAACTAATTCAGGGGGATGTAGGGGTGTGTATGACGCACAGGTCGTGTAGACTATACCGAATAGTAGCGGGATGAATACTGTAGGCTACTCTTTGCCTAACCATTCGATGATTCGGGGCGGGGTGTGAGGAGTGGCCTGCCGCACCAATTTCTGCAGAACAAGATTGGGCTTTGGGTTCTATAAGGGAATGGGATTCCTGCCTGCGCGCACCAGATAGTGCTTCAGCCACATTgagagagactagagaaacgTTCCAACATGGAGGGGACACAGGGCCTCCTGGCCATCTTCACCATAGCAACATGTTTTCTGGTTAACGGAGCACAAAAAACAGTCTGCAAGGAAGAGGCTGTGGCCGACATCGTCTTCCTGGTGGACGGTTCATGGAGCATCGGCTCAGAGAACTTCAAACAGATTCACCAGTTCTTGTACACGCTGGTCAACAGCTTTGACGTGGCCCCCGACCAGGTGCGCATCGGTTTGGTCCAGTACAGCAACACACCACGCACCGAGTTCCTCCTCAACACCTTCCAGGACAAACAGGACATCCTGCAGTACATTAACAACCTGCGTTATATGGGTGGTGAAACCAACACGGGCCTGGGCCTGGACTTCCTACTGAACGAGCTCTTTGTTGACCGCGCAGGGAGCCGGGTGAATGAGAACGTGCCCCAGATCGGCGTGGTGATCACTGACGGTAAATCAATGGACAATGTGGGGCTGCATGCCCTTAAGCTGAAGAAGCAGGGCGTCACGCTGTACGCCATCGGGATCAAAGAAGCAGACGAAGATCAGCTGAAGGAGATTGCCACTACACCTCACAACCAGCACGTGTACAGCGTGTCGGACTTTGCTGCGCTGCAGGGGATCTCCCAGAGCCTCATCCAGGGGCTATGTACTACCGTAGATGAGGCAAAGAGATCAATATCCAAAGTGGTACAAGAGTGCCTCAACGCCACATTGGCTGACATTGTGTTCCTTGTGGATGGCTCTTCCAGCATCAGCAAAGACAACTTCCAGGAGGTTCGGAGGTTTCTCCACAGCTTCATCGAGGGGCTGGATATCGGAGCGGACAAGGTTCACATAGGACTGGCCCAGTTCAGTAATGAGATCCAGAAGCaattccatttgggggaacataTGGACCAAAGGGCCCTACTGGAGCATGTGGACGGGCTTGTACAGCTCGAGGGAGGCACAGCCACCGGCAAAGCCATTACTGTCCTTCGGGAAGAGTTTTTCACCAAGGCCAACGGTAGCCGCGCTGATCAGAGGGTGCCTCAGATTGCTGTGGTGCTCACCGACGGGGCGTCTGCGGACAAGGTAACGCTGCCAGCCAAGGCGCTAAGGCAGCAAGGGGTCATTGTGTTTGCTATTGGAGTTGGAGCAGCCAACATCACCGAGCTGAAGGATATCGCTAACAGGCCCCATGAGCATTTCGTGGTCAACATAGAACATTTCCAGGCCCTACAAACACTTTCTCAGGGTCTGTTGCAGACTGTCTGTGTTACCATGGAGAACCAGAGGATGGCTCTAATCCCAAAGTTCTCTGATATCTTCTTCCTGGTGGACAGCAATATGATGCAGGCAGACTTCCAGCTGGTCAGAACCCTTCTGATGCGACTGGTACACCAACTCAACCCGAGCACTAAAACGATGCGCCTGGGTCTGGCCCAGTTTGCCCAGGACACCAAGGTGGAGTTCTTACTGAACACCCACAACACCAAGGAAGAGTACTTGGCAGCTCTTAGGAAATTCAGGCTGCCGCTGCGTCCCAACAGGTCTCGTCACCTGGGCGATGCCCTGGAATACGCCCGTGCACACTTCTTCACCACAGCGTCTGGTGGCCGTAATGAACAAGGCTACCGGCAGTTTCTAGTCACGGTGACAGGGGGGGATTCGAAGGATAACGTGATGAAGGTGGCACGTACTATCAAATCTGAAGGGACAACCATTGTGTCTATCGGGTTGGGTGAATCTACACTTCCAGAGCTAAAGTTAATGGCCACCTCGCCATTCTTTTACCAGACTACATCCATCACCTCTGTGCTAAAGACTGTCTTTGAGACTGAAGAGGTGGTCACTGTGACTGACGATTGCAGTGAAGCTTCACTGGCTGACATTGTGTTTATAGTTGATGAGTCTTCGAGCAATAGTACTGCAAACTTCCAGCTGGTTCGTGGATTCATCCACAAGATAGTGGAGGGCCTAGATATAGACTGCAAAAGGGTGAGGGTGGGCATCGTCCTCTATAGCAACAAGGCCTCGGCCCAGGTCTACCTCAACTCCTTCCAAGAAAAAACAGATATCCTTCAGTTCATCAAGATCCTGCCCCACCGTCACGGTCTCACATACACTGGCGAGGCCCTGGAGTATGCCAGGGAGAAGATGTTTATCAAGGAGATGGGCAGCCGGAAAGAACAGGGGGTGCAGCAGGTGGCGATAGTCATCACCGGAAAGTCCCAGGACAACGTAACTTCTCATGCCGCTGCACTGCGCAGAGCTGGCGTCACTGTCTATGCAGTGGGGATCAAGGATGCTGACGAGAATGAGCTGAGACAGATCGCTTCAGATCCCCCTAACAAGCACGTATTGCATGTGGACAGCTATgccaagctcaagaccctggagAAGAGCCTGAAGAGGAGCGTGTGCTACAACATCCTTAAAAAAGCAGTCAAAGACAACGCAAGGACATACACTGCCAAGCAAAGCTGTTTGCAGACAGATGAAGCAGACATGTTCTTCCTGATCGACCACTCAGGGAGTATTGAACAACTAGACTTTGCTGACATGAAGACATTTATTAACAAATTCATAAACACATTCCACATCGGACCGTATCATATCCGCGTGGGTGTGGTAAAGTTCTCTGATACACCAGCTCTTGAGTTTGATTTGACAACCTACCCTGACAAACCTTCAGTGGAGAAAGCAGTGGATGGTATCATCCAACTTGGAGGCGGGACAAAGACCGGATTAGCGCTGAACTCTATGGGTCCCCACTTTGATCGGGCTAAGGCCACCCGAAGTCACAAAGTTCGCGAGTACCTCATTGTCATCACAGACGGAGAGTCTGAAGACAACGTGAAGGATCAAGCAGCAAAGCTGAGGGCGCAGGGCATCACCATATATGCCATTGGGGTGAAGCTAGCTAACGATACACAGCTGCTGGAGATTGCTGGCAGCCAAGAAAGGAAGTTCTTTGTCAACAACTTTGACGCTCTGAAACCAATAAAAAATGACATCATCACAGATATCTGCTCCCCTGATATTTGCAAGGACATGAAGGGGGACGTCCTCTTCTTGATTGACAGCTCAGGTAGCATCAACAACCCAGACTTCCAGAAGATGAAGGTCTTAATGCAATCCATCATCAACAAATCTGACATAGGCCTGGATAAAGTGCACGTGGGCATCATACAGTTCAGCACCAGCCAACAGGTGATCTTCCCTCTCAACAAGCATAACGATAAGGAAGGCATGCTGCAGGATTTACAAACGATGCAACAGATAGGCGGGGGCACACACACCGGCAAAGCCCTGTCCTACACCTCACAGTTCTTTGACCCACCGAAAGGAGGGCGCACTAACGTGAAGCAGTTCCTGATTGTCGTAACCGATGGTGAGGCGCAGGATGAGGTAATGTCTCCTGCCAAGAAACTTCAAGACAAGGGTGTGATCATCTACGCTATTGGGGTGGTCAATGCCAACAATACACAGTTAGTGGAGATCAGTGGCGCACAGGAGAGGGTCTACTCCGAGAGGGACTTTGATGCACTCAAGGCTTTGGATAGCCAACTGGCATTGGCAATCTGTGATCCGGAGAGAGAGTGTGTGAGGACGGAGATCGCAGACATCATTTTCTTGGTGGACGGCTCCACCAGCATCAGCTCAGATAATTTTGACATAATGAAAAACTTCATGATGTCCGTGGTCAATGAAACCTCTGTTGGGGAGAAGCAGACACGCTATGGTCTGATTGTCTTTTCAAACAACCCCGAGTCTAAATTCACACTCAACGAATACAAATCTAAGCGAGACGTCAATAGTGCCATCACAAAGCTTAGAGGGCCCAGTGGAGACACCTACACTGGAAAGGCACTCAAGTATTCCTTGGGTTATTTTGGTGCACAGTACGGTGGGCGAAAGGCCCTAAATGTTCCCCAGTGGTTGATGGTGATCACAGATGGTGAGGCTACTGACCACAATAGCCTAGCTGGGCCAGCCAAGGAGCTACGGGACAATGGGATCATAGTCTATAGCATCGGAGTGGTTGGAGCAAATAAGCAAGAGCTTGAGCTCATGGCAGAGGACACGAATAAGGTTTTCTTTGTGGATGACTTCCATAAACTAAATACATTGCAGAAAAATATTGCCTTTGAATTCTGCCAAACCAGCAAACCAGtCTGTGAAAAAACGCAGGGGGATCTGGTCCTGTTGATTGACAGCTCAGGGAGCATCAGCACCACCGACTTCACTATCATGAAGAAGTTTGCCACATACCTTGTTTCCAGCTTCAACATTGCAGAGCAGTCCTTCCGGGTGGGAGTCGCCCAGTTCAGCAGTGATCCTAAAAAGGAGTTCTTCTTGAATGAGTATTACACAGAAGCAGAGGTGAACATCCAGATAAACAATACGATGCAGATTCCGTACACAACGAACATCGGAAAGGCCCTGCACTACATCCGTACAGAGTACTTCCAACCAGCTAGAGGGAGCCGTATCAATGCCAAGGTCTCTCAGAACCTGGTTGTGATCACTGACGGACGTTCagatgatgatgttgttgatgaagCAGAGAAGCTCAAGGCCATGAACATTGAGGTGTTTGCCATCGGTATCGGGAAAGACCACAAACCTGTTGAGCTTGGGCAAATCACTCTCAACCCGGAAAGGGTCTTCTCTGTGCAGGACTTTGCCAGCCTGGACAAGATCAAGAAGAAGGTGGTGGATACTATATGCTCCTCCACTCCAGCGGACTGCACCATAGACATCGCCATGGGGTTCGATATTACACGCAGGGCCACCGCCCAGGGGCTCTTCGATGGCCAAGCCCAGCTACAGGCCTTCCTGCCACAGATCATCCGCTATGTGTCCAACCTGAAGGGCCTGTGCTGCGTGGCGGGAGATGGTTCCATTGAGACTAACATTGGCTTCCGCGTGGTGGAGCAGGACGGAAAGGTTCTCTACGACTACAACTTCGAGAAGTACGACGAGAAAATTGTGGAGAAGGTTATGGCCCTGCAGACCTCCCAGACAACATACTTCAACTCCTTCCTCCTGCGCTCCTTCAGTGATAAGTTCCAGAAATCTAATGCTGGCGTGAAGGTGCTGGTGATCTTCTCAGATGGACTCGATGATGACGTGGTGAAACTGGAGCAAGAGTCGGAACTTCTCCGCACTAAAGGTATCAACGCCCTGCTTACAGTCGCCCTAGAAGGGGTCCAAAATGCCAACCTTCTTCAGATGGTGGAGTTTGGGCGAGGATTTGGCTACAAGCAGCCCCTCAACATTGGCATGCACAATTTGGGAAACACCCTGTTGACACAAATAgaCACAGTGGCTGAGAGGGAGTGCTGCAATGTGATGTGTAAGTGCACCGGACATGAGGGTATCCGTGGCAACAGAGGACGCCCAGGGACAAAGAGTCAGCCAGGACTGAAAGGACACCCTGGCTTCCCTGGCGAGGAGGGGGGAATTGGCGAGAGAGGTCCACCAGGTCCCACTGGCCCACAGGGACTACAGGGCTGTTCTGGGAGGAGAGGCCTCAAGGGCTCAAGAGCCTACAGAGGGGACAGGGGTAATGATGGAGACCAAGGCCTTGATGGGGTTGACGGTGAACAGGGTCTGATTGGAACAGCTGGagctgcaggagagagaggaaacccAGGAAGACCAGGCAACAGCGGCCTCATAGGAGAGCCAGGAGTGAAGGGGCAGCGTGGACTTAGAGGTGACCCTGGAGACTCTGGAGTGGACAGCATTGTCGCGGGTCCCAAAGGAGGAAGGGGAAACCCAGGACTACCGGGAGACCCAGGAGAAGAGGGCAGTCGAGCAGAAAGTGGAATCGTTGGAAACCCAGGTCCTCAAGGAAGAAGAGGTCTCCCTGGTCCAAATggaaCACCAGGGGATCCAGGAGATGTAGGCCTCCAAGGAATTCCTGGCCCTTCTGGACCACAGGGTATAAGAGGAGACTTGGGCCAGCCCGGACCCAGGGGCCTGCAGGGTTTACCTGGACCTCAGGGCACACCTGGAACTATGGGTGGCAAAGGTTCAACAGGAAGACGAGGGATGAATGGACAGAAGGGCCAACCTGGGGACCTCGGAGTCAACGGAGCCCTTGGAACACTTGGGCCAAGAGGGATGCCGGGTCTTGATGGCAGTGACGGCCATGGGCCTCCCGGACCCCAGGGAATGAAGGGAGAGCCTGGTTTCCATGGTTACCCTGGATTACAGGGTGAAAGTGGTGATTTTGGAGTCAAAGGAGGTCCAGGCCCCAAAGGAAACCGAGGCAGAGGGGGGAACTCGGGCAGATCGGGTGAGTCAGGAGATCCCGGATCCATTGGACCACCGGGACACACTGGCTCTAGAGGCAGACCAGGAGAGAGAgccatgtctGAATGCCAGCTGACCACCTATATCCGTGATAACTGTGCATGCTCTCAAGGCCAGGCAGCGTGCCCAGCCTACCCCACAGAGCTGGTCTTTGCTCTGGATATGTCACAGGATGTGGAGCCTGCCACGTTTGAGAGGATGCGCTCCGCTCTCCTCTCCATATTGGATGACGTTGCCATCGCCGAGAGCAACTGCCCGACGGGTGCACGTGTTGCCGTGGTATCCTATAGTGCCAACACCAAGTACCTGATCCGATTCCAGGACTACCAACGCAAGCCGGAGTTGTTGGAGGCCATCCAAAACATTGCACTGGAACGAAAGTCCAACCAGCGCCATCTTGGGGAGGCCATGCGCTTTGTGGGGCGCCATGTCTTCAAGCGAACCCGTAAAGCATTGACGATGAGGAAGGTGGCAGTGTTCTTCACCAACGGGCCCTCTGTGGACAGCGCTGCCATCGTCACGGCCGCCATGGAGTTCAAGGCCTTGAACATCGCTCCTGCTGTCATCGCACTGAGGAACTCCCCCGATGTTCAACGGGCTTTTGAGGCTGATGACACGGGCAGCTTCATCCTTGTTCGGCTGGTGGATAGGTCACAGGACCAAAATGCTGTGCTGACAAGAATCAAAAATTGCGTCATCTGCTACGACCACTGTAAACCAGCCCAGGGGTGTGATTTTACTGACGCTCAGCGGCCCCTGGTGGTGGATATGGACCTGACCCTGGTGGTGGACGGTTCAAGGGAGATCCGGGCCGATCAGTACGCTGGCGTCCAGGAGCTTCTGGGCTCAGTGGTGAAGCAGGTAGCCTGGAGCCCCAAACCCAGCGTGGCTGACGGCCGGGCCAGAGTGGCCCTTCTCCAGACCAGTAGTTCTCTGCTCCCCCAGACTTCCCAGGCCGTCACGGTAGAGTTTGACCTGCAGAAGTACCACAACCACATTGGTCTACAGACACACCTGAGGAGCATGCAGCAGCAGGGAGGAGTGTCGTCTCTGGGGCAGACCCTGGAGTACGCTCTGAGCAAGGTGTTCCTCAAGGCCACCAGGCCCAGGAAGAGTAGAGTGGTGCTGGCTGTGGTGGGGGCCGAGACAGCCCACTGGGACCAGGCCAAGCTGGCCTACATTTCCCAGAAGGCCAAGTGTCAGGGCGTTTCCCTGTTTGTGATCGCAGTGGGCGACCATTACAACAGCACTCAGGTGGAGGAGTTGGCGAGCACGCCGTCAGAGCAGCACCTGCTCCATCTGTGGCATGtgaaggagtgggagagaggctaCGCACAGCGCTTCTTCAGGGCCTTCCTCAGGGTCCTCAGTAAGGGAGGGAACAGCTACCCTCCTGCCCATCTCAAACTCAAGTGTGATCTGATGCTGGGACAGGAACACGGACAGGGacaaggacaggcagagtgggatgtgtggaaagaggaagaggagtacACAGATGAGGAGGAGTTCCTGGAGCACACTGGTGTATTTCCGACTCAGATAGCTCTTGACCAGGTTGACACTATACATGCCTTCTCCAGGGGAGATGGAGCCACTTCACCCCCCCGGCCACAGCCAAACTCTAATGATCACACAACCCTCCTGAGGACAGAGGAAAGTACAGTTCTTAACCAGGaTGCATGTTTCTTCAAACAGGACAAGGGAGGTTGTGAGAACTACACTCTGAAGTGGTACTTTGACACGACACAGAGCGAGTGCTCCCGTTTCTGGTATGGCGGCTGTGGCGGCAACGCTAACCGTTTCGAGACGCAGGAGGCTTGTGAAGGCCTCTGTCTGAGGAGGAACTCCACACATGTAAAACCCTGATTAGAGTGAATTGAAGAAGATCACGCCAGAAACCAGCCAAACAAATGTCTCATTCAAGATCAACAGCTACCAAACCAAGTCAAGCACCAGGCAATGCACTGTTAACTTGGATGTTAACCGTACATGTAAATTCAGGCTGTATGTCATCCGCTCAGTGTTTGTAAATAGGATTTGTTGCACTGTGTGTCTGTTTCCTCTAACTTGACcattttgtttacataccctacatctcatatgtatatactgtactcgataccatctactccatcttgcctatgccgttctgtaccatcactcattcatatatctttatctacatattctttatccctttacacttgtgtgtataaggtagtagttttggaattgttagtttagattactcgttggttatttctgcattgtcagaactagaagcaaaagcatttcgctacactctcattaacatctgctaaccatgtgtatgtgacaaatacatttgatttgatgctaAGTGTTGAAAATAAAACTACACAAATTC

Function

GO: NA

KEGG:

id description
K06238 COL6A; collagen type VI alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250330 lncRNA downstream 31294 5425739 ~ 5426232 (-) True G219464
TU250324 lncRNA downstream 42562 5412364 ~ 5414964 (-) True G219459
TU250301 lncRNA downstream 119065 5338247 ~ 5338461 (-) True G219450
TU250300 lncRNA downstream 125470 5331829 ~ 5332056 (-) True G219449
TU250237 lncRNA downstream 245883 5211348 ~ 5211643 (-) True G219388
TU250365 lncRNA upstream 15518 5508041 ~ 5603177 (-) True G219491
TU250369 lncRNA upstream 24873 5517396 ~ 5611217 (-) True G219494
TU250371 lncRNA upstream 26840 5519363 ~ 5612281 (-) True G219495
TU250373 lncRNA upstream 27269 5519792 ~ 5618681 (-) True G219496
TU250376 lncRNA upstream 33852 5526375 ~ 5621220 (-) False G219498
XM_036966688.1 mRNA downstream 17623 5376122 ~ 5439903 (-) True LOC110535504
XM_036966694.1 mRNA downstream 17976 5376122 ~ 5439550 (-) False LOC110535504
XM_036966687.1 mRNA downstream 29455 5376122 ~ 5428071 (-) False LOC110535504
XM_036966650.1 mRNA downstream 101990 5352140 ~ 5355536 (-) True LOC110535340
XM_036966623.1 mRNA downstream 121952 5333873 ~ 5335574 (-) True LOC110515205
XM_036966709.1 mRNA upstream 65471 5557994 ~ 5590146 (-) False LOC110513540
XM_036966710.1 mRNA upstream 65471 5557994 ~ 5590146 (-) True LOC110513540
XM_036964023.1 mRNA upstream 231159 5723682 ~ 5725550 (-) True LOC110533792
XM_036966773.1 mRNA upstream 262537 5755060 ~ 5766123 (-) True LOC110535565
XM_036966782.1 mRNA upstream 286297 5778820 ~ 5790359 (-) True LOC110535576
TU250121 other downstream 448120 5008084 ~ 5009406 (-) True G219290
TU250017 other downstream 685475 4770350 ~ 4772051 (-) False G219200
TU250018 other downstream 685475 4770350 ~ 4772051 (-) True G219200
TU249925 other downstream 808723 4643970 ~ 4648803 (-) True LOC118944839
TU249887 other downstream 917085 4538662 ~ 4540441 (-) True LOC118944829
TU250378 other upstream 195202 5687725 ~ 5688291 (-) True G219500
TU250493 other upstream 255635 5748158 ~ 5748714 (-) True G219591
TU250494 other upstream 259201 5751724 ~ 5752094 (-) True G219592
TU250699 other upstream 837079 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other upstream 840445 6332968 ~ 6338813 (-) True G219820

Expression Profile