RNA id: TU249013


Basic Information

Item Value
RNA id TU249013
length 428
RNA type TUCP
GC content 0.56
exon number 3
gene id LOC110535491
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5533015 ~ 5627436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTGGAGGAGATCACCTGTCTGGGCACAGCCTCACCTGGACTCTACCTGAAGATTACAGACGACGTGCAACTGCTGGAGGACTCCTTCTTCAACAACGTTACTGGCTATATCTGCCAAGATAAGAAATGTCATGATTACACCTGTCCAGCCAACTTCCAGGAAGCTACAGACATAGTCTTCATGTTGGACGGCTCCTCCAGTGTGGGCCAGGCCAACTTCTACAGAGCCAGAGAGTTTGTTGAGAACATGGCCGCCAGGCTGCTGTCACAGGACCGGGGAGGGCTGCTCCGCCTGTCCGTCATGCAGTACAGCGATGGGCAGCAGCAGAGAGTGGAGGTGCCCTTCACTGCTAGGGTTGAGGATGTGCTAACGGGGCTAGCAGCTACGCTCTACATGGACGGGGCCACCGACTTACCGGCTGCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249070 lncRNA upstream 23295 5596586 ~ 5602412 (+) True G218497
TU249040 lncRNA upstream 51147 5474121 ~ 5574560 (+) True G218476
TU249038 lncRNA upstream 52636 5472865 ~ 5573071 (+) True G218475
TU249035 lncRNA upstream 55765 5569367 ~ 5569942 (+) True G218473
TU249002 lncRNA upstream 64436 5460938 ~ 5561271 (+) True G218465
TU249055 lncRNA downstream 5818 5632396 ~ 5633481 (+) True G218487
TU249111 lncRNA downstream 56820 5683398 ~ 5683643 (+) True G218534
TU249114 lncRNA downstream 64598 5691176 ~ 5692870 (+) True G218537
TU249115 lncRNA downstream 65328 5691906 ~ 5693069 (+) True G218538
TU249116 lncRNA downstream 66758 5693336 ~ 5693844 (+) False G218539
XM_036966718.1 mRNA upstream 13585 5605777 ~ 5612122 (+) True LOC118936615
XM_036975427.1 mRNA upstream 88584 5504091 ~ 5537123 (+) True LOC110493157
XR_005040251.1 mRNA upstream 105306 5520091 ~ 5520401 (+) True LOC118944860
XR_005040249.1 mRNA upstream 122234 5498544 ~ 5503473 (+) True LOC118944859
XM_036966670.1 mRNA upstream 171218 5440095 ~ 5454489 (+) False LOC110534114
XM_036966755.1 mRNA downstream 10684 5637262 ~ 5706145 (+) False LOC110534121
XM_036966756.1 mRNA downstream 32766 5659344 ~ 5704565 (+) True LOC110534121
XM_036966764.1 mRNA downstream 103339 5729917 ~ 5733058 (+) True LOC110535554
NM_001165218.1 mRNA downstream 109228 5735806 ~ 5744817 (+) True cklf7
trnat-ugu-30 mRNA downstream 174299 5800877 ~ 5800949 (+) True trnat-ugu-30
TU249003 other upstream 64436 5460092 ~ 5561271 (+) False G218465
TU248783 other upstream 299698 5325427 ~ 5326009 (+) True G218301
TU248804 other upstream 603834 5018694 ~ 5021873 (+) False LOC110507709
TU248775 other upstream 664257 4945003 ~ 4961450 (+) True G218293
TU248792 other upstream 685813 4937097 ~ 4939894 (+) True G218309
TU249136 other downstream 121647 5748225 ~ 5748742 (+) True G218558
TU249190 other downstream 263948 5890526 ~ 5896248 (+) False LOC110508149
TU249194 other downstream 263948 5890526 ~ 5896248 (+) False LOC110508149
TU249269 other downstream 330749 5957327 ~ 5963796 (+) True LOC110508220
TU249361 other downstream 502752 6129330 ~ 6156137 (+) False LOC110535756

Expression Profile