RNA id: XM_036966801.1


Basic Information

Item Value
RNA id XM_036966801.1
length 2380
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110535585
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5790467 ~ 5797248 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTATAAGATACATGAGGTGAGTGGGTCCAGTGCTGGTCCTGCTGTATTCTGTGGAGTGGGCCTGACTCTGGGACTGTTGGGAGTGGCTACCGGAACATTCCTATGGCTATTTTGGACACTTTGAGATGAGGTGTCGGTTCAGCTCCGAGGAGCCCCGTGATATTGAGTTTCTGCTGCAGGTCTACGGCAACAAGAAGTTACTGGGACAATACAACAGCACAACAGAGAAATGTACGGTCTACACACAATGGATGAAGAACTTCACTGAAACGGCCTGCAAAGGCCCTGCTTTTCTGGCCGCGAGGAGAGACGAAATTAAGAAATACTGCAGCAGCAACGTTCCTGTGGTGTATGGGTACTTACTAGATAAGGCAGTTGAGCCCTACGTCAGGCTGAGGTCAGTCGAGCCGTTCAGTACCAGACACCTGGCCATGCTCGTGTGCAGCGCCTACGACTTCTACCCCAAACCAATCAGAGTGACGTGGCTGAGGGACGGACAGGAAGTGACCTCAAATGTGACTTCCACAGAGGAGCTGGTCAATGGGGATTGGACCTACCAGATCCACTCGCACCTGGAGTACACACCCACACCTGGAGAGAGAATCGCCTGTATGGTGGAGCACTTCAGCCTCACTGAGCCCAAACTGTATGactgggACCCCTCCATGCCGGGTCCTGAGAAGAATAAGATGGTGATCGGGGCCTGTGGGCTGCTGCTGGGGGTGGTCTTTATAGCAGCTGGACTGATCTACTACAGGAAGAAATCTACTGGCGAGGAGACACAGGCTATTCTATGTCACAACAACCAAATACTTTTCAAGTCCAAATTTGAAATGCAACTTTATCTTTTTCGTTCTCTTTCAGAAGGACGAGTGTTGGTGCCGACCATGGCGCTGCCAGAAATTTATGGCACCATCTAGTGGTTCTGCCTTCTGAAGGTTGTGATCTGAACCCACTTAattagtctgggtaccagtctttttagctaacattccactccttgttgCCTTTTCCGTGACATATGCCAAGGAGGTCAAGTAGTGGAATGTCAGCTAaaaagactggtacccagactaccACTTAATCATTCCAAGCACAATGTCTTCTCAGTCTCCCAGGCCTTTTGCATTGGAGGAGAGGTTGCAGCCAGAAACTCCCAAGGCCCTTCTATGGGGATCAGAATCCCGGCATTCTGATCAAGAGTTTACCACCGAGTGGCCAACTTGATCAAATCTATGTCCACATCCTGTGCGTTTGAGACGTTAGATCTAGGATATGATTTTGTAAGGAATTTTCAGATGCGACAAACAAGATTGGTTTATGGAATTGTTCATCCTTAGGTTTTGATTCTAATTCTTGTTTCTATTGGCAACTGATGTTATTGTTAACTTGGCTTTGTCTTTTATTAAAATAGTTTTATTTTGCAGTTTTCATTTGTTTGGGTATTTGTTGATAGATTCGCAAGGGGTAGGCTAGACGctgccagatcttacaacaccTAGATAGGTATTTTACCTTTCAGCTAACcacatatgttatagcaatctgacAGTCGATGACAAGTCGATGGACACAGTCGACAGTCGATGACGTGGCATGCAACCGTTCGTTGATTCATGCAACGTCTTAGCAGTGGAAAGCAACCATACCGTCTGATATTCCAcgtctttcagccaatcagcatccagaagccaaactacccagtttataaatgTCTATATTAGTGAAAAGCTATATAAGGCTATAAGTCAAATTACTTCCTCTCATGCTTTCCCTTCCTTCATGGACACTtatgcaaaaaataaaataaaataatgaaagcCATTTGAAAGTAAACATCCTCCATATTGTTTTCACTCATCCTTTGCTTTCAGATCAGTGCAAATCAAGGAAAGGAGGCTAAGAAACAGGAAAGGAGGCTAGGCTAGGACATAGGAAAAGAGGTTAGGCTAGGTCACAGGAAAGGAGGCTAGGACACAGAAGTCTAGCACCAGCAGACACGCCGTGCCAGAGGATTGGTTTGcgttccaggtcatcttttttTGCAGTCACAATTTGCTCAATAAGATTGCTGTATCTTATTCATGTGGTTCCTGATCCTTTCTACAGTCCAGACGTTGTTCCTGTGGTTCTACAGTCCAGACGTTGTTCCTGTAGTTCTACAGTCCAGACGTTGTGACGCTCATCTAAAAAGCGTGACTGCAGAAAAAGATGACATACAAGTTGGAAGACAACTTGAAAGTAAAATGTCAATTTCAAAAAATATATCAATGCAACTTTTTCCATTCCGAGCAGACACAGATTGTATAACTGCATAATTTAATCATTTATCATTTTGTACATACCCGTATTTAAAATGTCTCCTTCACTCTGTGCATG

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06752 MHC2; MHC class II antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250495 lncRNA downstream 23958 5766274 ~ 5766509 (-) True G219593
TU250465 lncRNA downstream 36057 5753326 ~ 5754410 (-) True G219574
TU250492 lncRNA downstream 42620 5747615 ~ 5747847 (-) True G219590
TU250491 lncRNA downstream 42855 5747291 ~ 5747612 (-) True G219589
TU250490 lncRNA downstream 43434 5746436 ~ 5747033 (-) True G219588
TU250466 lncRNA upstream 3936 5801184 ~ 5804117 (-) False LOC110490524
TU250467 lncRNA upstream 3936 5801184 ~ 5804117 (-) False LOC110490524
TU250468 lncRNA upstream 3936 5801184 ~ 5804117 (-) False LOC110490524
TU250469 lncRNA upstream 3936 5801184 ~ 5804117 (-) False LOC110490524
TU250470 lncRNA upstream 3936 5801184 ~ 5804117 (-) False LOC110490524
XM_036966782.1 mRNA downstream 108 5778820 ~ 5790359 (-) True LOC110535576
XM_036966773.1 mRNA downstream 24344 5755060 ~ 5766123 (-) True LOC110535565
XM_036964023.1 mRNA downstream 64917 5723682 ~ 5725550 (-) True LOC110533792
XM_036966709.1 mRNA downstream 200321 5557994 ~ 5590146 (-) False LOC110513540
XM_036966808.1 mRNA upstream 3933 5801181 ~ 5806960 (-) False LOC110490524
XR_005040260.1 mRNA upstream 99017 5896265 ~ 5898231 (-) False LOC118944866
XM_036966839.1 mRNA upstream 110923 5908171 ~ 5925670 (-) False LOC110508150
XM_036966830.1 mRNA upstream 110923 5908171 ~ 5925671 (-) True LOC110508150
XR_005040262.1 mRNA upstream 115830 5913078 ~ 5917801 (-) False LOC110508233
TU250494 other downstream 38373 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 41753 5748158 ~ 5748714 (-) True G219591
TU250378 other downstream 102176 5687725 ~ 5688291 (-) True G219500
TU250121 other downstream 781061 5008084 ~ 5009406 (-) True G219290
TU250018 other downstream 1018416 4770350 ~ 4772051 (-) True G219200
TU250699 other upstream 532354 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other upstream 535720 6332968 ~ 6338813 (-) True G219820
TU250797 other upstream 689252 6486500 ~ 6491015 (-) True LOC110507902
TU251084 other upstream 1132743 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 1132743 6929991 ~ 6932356 (-) False LOC110508304

Expression Profile