RNA id: TU250470


Basic Information

Item Value
RNA id TU250470
length 1286
lncRNA type sense_over
GC content 0.36
exon number 5
gene id LOC110490524
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5801181 ~ 5806960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACGTTGGCTTTGGCTTCTAGCCTGGCCGGGCTCCGCGGTAAGAAGAGACCTGCTAACACCGCCATCTCTCCTGCTGTACTGGCCAGTGGGAACAACAGCAAGAAGAAGAAATTTCAGCCCATCGCAAACCCGACACAAGCACAGGTGACTGCAGTGGAGGCGGTGTCTGAGGGGAAGGCAGTGGGCGTGTCTGACGCTGTAGGTCCAGCCACAACGGAACCAGCAGCCAAACCCCTGCCCTTCAAAGACCCAATATTTGTGGTGAGCAGACTGGGGGGGAACACTTGTGAAATGATAACTGGTTGATAGAGCATTTTCTGTCTTTCCCTCACTTGTCTTcgcctcactcctctctcccccctttctacaGCATTCAGGGATAGGGGGAGCTGCAGCAGGAAAAAAGAACCGGACCTGGAAAAACCTGAAACAGATTCTGGCAGTGGAACGGACTCTACCCTGGAAGATCAATGACCCCAATTACTACAGCATCGATGCCCCTCCCTCCTTGAAGCCAGCCAAGAAATACTCAGACATCTCTGGACTCCCTGCGAACTACACTGACCCCCAGACCAAGCTGAGGTTCACGTCATCTGAGGAGTTCTCCTTCCTGCGCCTGCTCCCCACTGACGCCGTCACCGGTTACCTGGCGCTCCGCAAGGCCACCTGCATTGTACCCTGACCGCAAGGCCTGCTGGGAGATGGGAGTTCAGCGTGTCTGTCATGGCCTGGGAGGGACATTAAACCATCATGGGGAACAATGTCTAGGAGGTGTCTGGGACTCTCAGGGAGAGGGACCAACAGGGACtgttacagagagagggatcCAATGGGTACCTTTGGCCCCCTTTCGACAACAAAGGAAGCGCCTCTAGTGTCGAGAGACTATCACTCCCAATCTGGCTAACGTCATGATGGGGATGTCTACACACACATTTTGAACTAGCTACTGTCTACACAGACATTTTGAGCTAGCTACTGTCTACACAGACCTTTTGAGCTAGCTATTGTCTACACAGACCTTTTGAGCTAGCTACCTGTCTACACATCTGAGTTGGCTGTCTACAGGAAAAACAATAGAGTGAATAACTTGACCTTCCTATGATGATTGCTCCTTGATCTGTCTGTAATCATATTTGTTTGTTATGTTGCTGTATGATGATAGTGTTGCTACTTGTTTTATCTGCCCTCTGTAAGATAACACTCAACATATTGTTACCTGTTttttaatgtatataaaaaacaaaatacttatCATCCTTACTGAATAAACTAGTTGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250495 lncRNA downstream 34675 5766274 ~ 5766509 (-) True G219593
TU250465 lncRNA downstream 46774 5753326 ~ 5754410 (-) True G219574
TU250492 lncRNA downstream 53337 5747615 ~ 5747847 (-) True G219590
TU250491 lncRNA downstream 53572 5747291 ~ 5747612 (-) True G219589
TU250490 lncRNA downstream 54151 5746436 ~ 5747033 (-) True G219588
TU250532 lncRNA upstream 29584 5833701 ~ 5833980 (-) True G219627
TU250522 lncRNA upstream 32985 5837102 ~ 5898140 (-) True LOC118944866
TU250535 lncRNA upstream 33775 5837892 ~ 5838778 (-) True G219630
TU250590 lncRNA upstream 172762 5976879 ~ 5981909 (-) True G219680
TU250608 lncRNA upstream 214205 6018322 ~ 6021156 (-) True G219698
XM_036966803.1 mRNA downstream 2168 5796918 ~ 5799016 (-) True LOC110490516
XM_036966801.1 mRNA downstream 3936 5790467 ~ 5797248 (-) True LOC110535585
XM_036966794.1 mRNA downstream 5204 5790467 ~ 5795980 (-) False LOC110535585
XM_036966792.1 mRNA downstream 5823 5790467 ~ 5795361 (-) False LOC110535585
XM_036966782.1 mRNA downstream 10825 5778820 ~ 5790359 (-) True LOC110535576
XR_005040260.1 mRNA upstream 92148 5896265 ~ 5898231 (-) False LOC118944866
XM_036966839.1 mRNA upstream 104054 5908171 ~ 5925670 (-) False LOC110508150
XM_036966830.1 mRNA upstream 104054 5908171 ~ 5925671 (-) True LOC110508150
XR_005040262.1 mRNA upstream 108961 5913078 ~ 5917801 (-) False LOC110508233
XR_005040263.1 mRNA upstream 108961 5913078 ~ 5917801 (-) False LOC110508233
TU250494 other downstream 49090 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 52470 5748158 ~ 5748714 (-) True G219591
TU250378 other downstream 112893 5687725 ~ 5688291 (-) True G219500
TU250121 other downstream 791778 5008084 ~ 5009406 (-) True G219290
TU250018 other downstream 1029133 4770350 ~ 4772051 (-) True G219200
TU250699 other upstream 525485 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other upstream 528851 6332968 ~ 6338813 (-) True G219820
TU250797 other upstream 682383 6486500 ~ 6491015 (-) True LOC110507902
TU251084 other upstream 1125874 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 1125874 6929991 ~ 6932356 (-) False LOC110508304

Expression Profile