RNA id: XM_036966830.1


Basic Information

Item Value
RNA id XM_036966830.1
length 4280
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110508150
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5908171 ~ 5925671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGACGGTCACGTCACCAGTACGTCTAGTGTTGTGTTGTTCCTCATGTGTGATAGCGGTATCAAAGATCCTGGAAACGAACGCTTCTTCTTCCGTCTGTGGTGGAATTGGGTGGGATCCGCAGGAGGAACGCAGACCGAGGCGGATTCATTGAAGATGGCAGACGAGGAGGACTCGGGGCCGGAGGCAGAGCCGGCTCCTTCCTCTCCCGCGGAAACCCCTAGTTCCGCCCGGCCTCACTACGTCTCGTTCTCCGAGAGCGTCCAGCCAGCGGTGGGCATGATGAGCCAGCTACTCAGCCAGCCTTCCTCCCTCAAATTCGACAAGAACATCAAACAGGCCTTCTACAACACAGGAGCGATGATTTTCGTGGCTATCTGTTGTGGAGCGGCTGTGCTAGTCTTCTTTATCCTGGAAGCCTTTCTGAGACCACTGCTCTGGGCCGTTCTCTGCGGGACCTTCCTACACCCATTTAAACACTCCCTAGCCCGGCTGGGACGCTCCTGGCTCAACGGCCTGCAGGACACCGGGACGCCGATACTCCTGGGGACGCTGCTGGTCCCGGTGTGGTGTTTCAACCACGGGGTGGATTTCCTGGGGGGTCTGGTGCTGGAGAGGCTCACGATGCTGCTGGTGATCGGGGCAGGCGCGCCACTCATTTACTTCTTTTACCTGTTCTGGAGCGTCATTGGCATGCAGGTGATCATCGGGCACGTGTGTGGCGTCATCGGGAGCGCGCTGGACTGCTTCCACTATGTGTGGgTGATGACAGTGGTGTTGGGGTATGTGCTGGCTGTAGCCTGCAAATGGAGCCCCGGTACAGAGAGATACCTGAGGACTATGTCTGTACCTGTCTGGACCATACTACTCTTCTACctggTGTCTCTGACTGGCTCGTGGAGAGTTCCTGTGTTTGTAATCATGGTCACGCTCCTCATCGTGGGCTCTCAAGAGAAACCACCTGTCCCTGGCAACTCGGGTGAGCTGTCAGGACAGGTGTTGTCGTTCGCTGCTAACACCATCTACATGGCCATCTCCTGCAGTAACCTCCACTTGGGCCCCGAGAGAGATACCAGCACCAGTAGTGTCTCCGCAGatgggGTGGACTCTGTGGGCCCTGGCCCTTCCGGTCCCCCCTCTGTCTTCCCGTTCCCCCGTCAGGCCCGTCCTGAGCTGAGGGGTCTCTTCCAGAAGGAGAAGGGGTCCCAAAGAGCCAGTGATATCTACTTTGTCCTGCTGGCCTGGGCTTTTGTACTGGTCCAAGTCTGGCTCAATCTCTGGATGCTACAACTACTGCCTATCCCAGTGGCTGtgtgggTGTTGAAGAAGCTGGTGGTACATTTTGGTCTGAAGCGATTCGCTGAGAAGACTCTGTCGTCATGGTGGGTAGGACTGGAGAAGTTTGGCCGTGAGCGACAGGACGCCATCATGCCTGGACCAATCAAAGGACTCGTTCAGTTCCTGCTACGCGTTGACACCAAGCTCTGGCATTGGCTTAACAAGCAGatggTCATATGGTTAGAGCGCTCCCTGGATAAACTCATCAGTATCTTCATCATCTTCCTGCTGGTGACAGGAACTCTGCTCATGGGTCTCCTGCTCACTGCTATGgttcaTCATGAGAGTGTTCATATCATAGAGGTCACCAGTAACCTTATCAACGAGACTGTGTCCAGCCATCCAGAATGGGCcaattgGCTCCCTGAGGCACAGGTCATCCAGAAAGCTATGAACTCAGCTGCCACTAACGTCTACCAGCACGGTCGAGAATGGATAACATTCAAGctcCATAAGATGCTTGGTGAAAAGGGgaaccacacagctgtcatagaGAAGCAGGTTCTGGAACTGTGGGATAGACTGTACCACTCCTGGTTTGTCAAGAATGTAACCCATACAGGAGGGCGTAACCGTAGTGGTGGTCAGAAGCTTGTCCAGAGACAGAACAGCTGGCTGGGAGAGATCTTAGACTGGCAGGACATCGCCTCCTTCGCTCAGGAGAACATAGAAACACTGCTCTCTATAGTGGAGTCTCTGTGGGTGGTGATGAGTCGGAACGTTGGGCTGCTGATCTCCACAACGACCACACTCCTCACTGTCCTCTTCCACAGCGGCACAGCTCTACTCAACTTCGCCCTCagcctggtgatatTCCTGACGACGTTGTTCTACCTGCTGAGTTCCAGTGGAGAGTACTACGAGCCTGTCAAATGGGTGATCAGCCTCACTCCTCTGTCCCAGCCCGGACCATCCTCTAACATCATAGGACAGTCTGTAGAGGAGGCtatcagaggGGTGTTTGATGCCTCTCTGAAGATGGCAGGGTTCTATGGTCTCTACACCTGGCTGACACACACCATCTTCGGCATCCACATCGTCTTCATCCCCTCTGCCCTGGCAGCTATCCTGGGTGCAGTGCCATTCCTGGGGACGTACTGGGCCGCGCTGCCCGCTGTGTGTGACCTGTGGCTGGCCCAGGGAGAGGGGGTCAAAGCCTTGCTACTGCTACTCTTCCATCTGCTGCCCACCTACTTCGTAGACACAGCCATCTACTCCGATATATCAggtggtGGCCACCCGTATCTGACTGGTCTAGCAGTGGCAGGAGGAGCATACTATCTGGGTCTGGAGGGGGCGATCATCGGTCCTATCCTGCTCTGTATCCTGGTGGTAGCCTCCAACATCTACAGTGCCATGCTGATGAGCCCCAACTCTGCCCAGCCCACCCCTGTACAGTCTAGCTGGCCACAACACCCTGCCAGGTCCTTCATGGACACCACTCCCTCGGTGCTGAAGAGGGTGAGCGAGTGAGAGGTGGAGTGTCTCCTGGTTTCTCATTGGCTGGGTGCCTGTCCCTTGGCTTCTTATAGACTGATTACCTGGGAGTAGCACCCTTTCCTCCCTTGTGCTCCTCCCGAGCTCTACGGGATCTCCCAGGCGGAGTGGCAGGGTGTGAGGGGAGGTTACCCACGAAGCCATCAGCCTGATGAAGCTACTTTTCAGACCATGGAGTTGAGAccctcccctcccccaacacATATGAGACCATAGAACAGATTTACATTACAAATCAAATAAATGGTCCACAATATGTATACTGGGCACACCATATTTAATAGTGAATGTTTAATCATCTCGCTGAATGCGGTGCCTCTTTCAGTGTTGCAATAAGGGATGGGACATGTGGATTGTAGAACATGGGTCTGTTCTATCCATTCTATGTACACATATAAGACCCCCCAGTACCATATCTACAGACCTGCCTAAGGTGGGATGTATCTTACCCCACCCTCTCCCCCAATCCTTTCTGCCCCCTCTACCTGGCACTTTTGTGAAGGTTAAAGTTCAGAATGGGTCACACGTTGTACGCTGCAACGGAGCAATGGAGCACTGAGTCAATGAACTAACCCTGGATAGCTACTGGATGGGCAGGGTTTAGTTCCAGCCCAGCATTAACACATCTGATTCCAGTAATGAAGGATTTAATAAGGGAACTAAAGCCTGTACACACTGGTGCCCTCCAGAGGCCACCAATATTAACACTTAGCGCTTTTGGTTTTTATCATCTTTACTGTTATCATTAATATAATGCTGTTTTATTATCTCTATGGTTACGTGTTGTATGATGCATTGTCATGCTTATGAGTTCTGTTGACGTGGCAATGAGCACTGTATGCAGGCACTTCCTGTGCTGAGAGGTGGAACTTCCTGTGTTGatgtttttacatttaaaaacagaTTAGTTTTCAGCTCAAGTTTATGTTTTGCTCTCtaacacgcgcgcgcgcgcacacacacacacacacacacacacacacacacacacaggttgatgtCAGTGCTGCTGTAAGGTGAATGTAATCTAAAGGGCTGTAGTTGTTACATGTCACGGTAATAAGGTAGTGGGTCCTGGCCTGTACTAACTACATCCTATTATAAATCTATCACATACATACcccagattacacacacacattcactccaCATTTATGGGAGAAGGATGAACTTTCACATGATAAATGTAACTGTTTACACCAAGTGAACGATGTACAGGTATGTATTCTGAGTACTCTGTATGTGAAGCACGACATCCTCTAATGTGGCCAAAGCGTCAGCTGTCTGAGGTTGGGAGGACTGCTTATTTATCCTCAGACGGTTGGAGTCCTACTGTTGGCTCACTTCCCTCACCTCACACTGACGTCACCTGACCCTGGAACATACCGTTGCTGTGTTTTCTACTGGAAATGCACTGAGACAATAAACATGACTGTTTGAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250522 lncRNA downstream 10031 5837102 ~ 5898140 (-) True LOC118944866
TU250535 lncRNA downstream 69393 5837892 ~ 5838778 (-) True G219630
TU250532 lncRNA downstream 74191 5833701 ~ 5833980 (-) True G219627
TU250469 lncRNA downstream 104054 5801184 ~ 5804117 (-) False LOC110490524
TU250590 lncRNA upstream 51208 5976879 ~ 5981909 (-) True G219680
TU250608 lncRNA upstream 92651 6018322 ~ 6021156 (-) True G219698
TU250610 lncRNA upstream 97786 6023457 ~ 6023702 (-) True G219700
TU250580 lncRNA upstream 98324 6023995 ~ 6024216 (-) True G219671
TU250611 lncRNA upstream 99808 6025479 ~ 6025829 (-) True G219701
XR_005040260.1 mRNA downstream 9940 5896265 ~ 5898231 (-) False LOC118944866
XM_036966808.1 mRNA downstream 101211 5801181 ~ 5806960 (-) False LOC110490524
XM_036966803.1 mRNA downstream 109155 5796918 ~ 5799016 (-) True LOC110490516
XM_036966801.1 mRNA downstream 110923 5790467 ~ 5797248 (-) True LOC110535585
XM_036966794.1 mRNA downstream 112191 5790467 ~ 5795980 (-) False LOC110535585
XM_036966848.1 mRNA upstream 1628 5927299 ~ 5932956 (-) False LOC110508167
XM_036966856.1 mRNA upstream 1628 5927299 ~ 5932957 (-) True LOC110508167
XM_036966889.1 mRNA upstream 25886 5951557 ~ 5957032 (-) False LOC110520778
XR_005040269.1 mRNA upstream 25886 5951557 ~ 5957032 (-) True LOC110520778
XM_021620871.2 mRNA upstream 232359 6158030 ~ 6173396 (-) True LOC110535692
TU250494 other downstream 156077 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 159457 5748158 ~ 5748714 (-) True G219591
TU250378 other downstream 219880 5687725 ~ 5688291 (-) True G219500
TU250121 other downstream 898765 5008084 ~ 5009406 (-) True G219290
TU250018 other downstream 1136120 4770350 ~ 4772051 (-) True G219200
TU250699 other upstream 403931 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other upstream 407297 6332968 ~ 6338813 (-) True G219820
TU250797 other upstream 560829 6486500 ~ 6491015 (-) True LOC110507902
TU251084 other upstream 1004320 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 1004320 6929991 ~ 6932356 (-) False LOC110508304

Expression Profile