RNA id: XM_036966848.1


Basic Information

Item Value
RNA id XM_036966848.1
length 2696
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110508167
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 5927299 ~ 5932957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaggagaggagacgggcgAAACCAACAACAGACACATTCATCCCTAAACTGGGATATCATTACATTATTTTAAGATGAAATCCAATCACTTGGATTATCATGGACGTCTCCGTTTCCCACAAGATTTAAGTGAATTGGCAAAACAGATCGGTTCAGTTACAAATCCCGCTAATTCCAGATTGGTTTAACCGAGGCTCATTCGTTTGACATGACTGGATCCCGCTCCTCTCGCGCCCATTCACACTACGGGAAATAGCCTACGACACACTGAACAACCGCGTTGAAAATATTCTGTAGTGATGCGATTGAGGTCCAGTGATTAGGCTCCGTAAAGAAATGCTGAAATACAACCAACAATGAGGATTCCGTCTCAGTTCTGTCTCCTTTAGACCGTTTTTACACTCCCTTTTTGGCCATGATTTTCCTGCGCAGCCTGCTACAGCTGACGGTGCTCCTGGTCCAGGGCAGTTGGCGGGGGGTAGCGCCGAGTCCCACGGATGAAGGCGCACTGCGGGCGAGCCACGGAGACCACGGAGAGCCGGGCCACAAGGAGCCCCATAAGGACTCATACAGTACGTTCGCCTCGGAGTTCCTGGAGTCTAGACATCTATCGGATGAGGGCTACCCCTTCCCCACCGCCCCTCCTGTGGATCCCTTCGCCAGGATCAAAGTCGTAGACTGTGGAGTCACCAAGGGCTGCataagGTATGGGAAGCCGGGGTGTGATGCAGAGACGTGTGACTATTTCATGAGTTACCGGCGGATCGGGACAGACGTGGAGTATGAGATGAGTGCTGACACTGACGGCTGGGTGGCTGTAGGCTTCTCCTCAGACAAGAAGATGGGAGGAGATGACGTGATGGGCTGTGTCCATGACGATAATGGGCGTGTTCGTATCCATCACTTCTACAACGTGGGCCAGTGGGCTAAGGAGATCAAGAGGAATCCTGCCAGGGACGAAGAGGGTGTGTTTGACAACAACCGTGTGACCTGTCGCTTCAAACGGCCGCTCTACGTCCCGAGAGAGGAGACACTGGTGGATCTGCATCTCTCCTGGTTCTACCTGTTGGCCTGGGGGCCTGCTATACAAGgTTCCATCACACGTCATGACAACGATGCTCCGCCAGTCTCTGATCACATGATCAGCATCTATAAATATGAGGACATCTTCATGCCGTCTACTGCCTACCAGACGTTCTCCTCACCCTTCTGTCTGCTGCTCATAGTAGCCCTCACCTTCTATCTGCTGATGGGCACcccctgagagagaggagacgagaggagatgAGATTAGAGGAGACGAgatgagagaagatgagagaggagacaaaaggagagaagagacaacCCATTaacccagagagaggagagaagagaggagacgagatgacagaggaggagagaagagacgaggagagacgAGATGAGGGGAGACaagtggagagatgagaggagacgaggagagaagtggagagatgagaggagacgaggagagaagtagagagaagaggaaagagacagcAATAAGACTGAGAGTTCATTGTATTTCTGTCTGCCACACCCTCAATGCAGGGTGCTCTTTACACAGAATTACactataaatatatatgaataaatatatacagtaggaTACTATATATAATTTACATTGAGGACTCATCAGGAAGCTTGCAAATCATTCTGAAAATTGTACTGTGCTACCATAACAACATACACTAACCCATTAGTCAGAATATCTGAAATACTGTGTGTTTCTAGAGAACAGTAGCATAACCTTTAGTTTTGGCAAGGTATTTCATTTAGTGTATTTATGTTTACGACAGTAAGGTATCACACTCCTGACAACAAGTATTACTCCAACGCATGTGGTGAATCACAACTGGACCCTGAATATGTGAAGAACCTACAGACACGATACAAGGAGAcattacacactgggacagaCTACTGAGCCTGGAGAGAGACTTCACTTAGAGAGAACCGTCCAGATTGATGTGAGCCAAAGAAAGGCAGACGGGTCATAgtttattatcctgctgaaacatACTGCTTCTGTATGCAGCCATGCTTTACACAACACTCATTCTCCACAGGGAAAtacagtattattagtagtagtattatagtatttgTATACAGAAACTAAGACTAGGTGGTTGaacagatgtttttttgtttgtttcagcCCAGTCTCACTGAGTAACACTGAACTCTCTACTGTATTCCACAATGCCATTTTACATGCTGATGATTAAGACAGGGTTCTCTTTTCTCTATGTGTGAGAGGGTCCATTTTCTTAGGACTGATTTATTCCACCACGTGCTTGGTCATGTTTCCTTTGTCTGtggcgaggtgtgtgtgtgtgtgtgatcactgtttgctgatgataGGGCAACTGACTGTATGATTGATGGTGCATGATTCCTTTGTAGATATGCAATAACACACCGATCAGCACTGAGGCTGTAGTGGACATGATGACAGCCAGGGACATGGGCTCTGTCTGACAGCTTGCCTTGGCCCTGCAGCATATGGCCTAACGCTGAAGGAATCTATGGCACAGAGTCCAGTTGTATTTGTACCGTTCACTGAACCGTTGTGTTCCATGGAAATGCTTCCTCACTGAAACAGTGTTTAGTGTCTAACATGCAAGTGTTTTTGTTATCAATAAAGCTGTGTTCAGTACACTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250522 lncRNA downstream 29159 5837102 ~ 5898140 (-) True LOC118944866
TU250535 lncRNA downstream 88521 5837892 ~ 5838778 (-) True G219630
TU250532 lncRNA downstream 93319 5833701 ~ 5833980 (-) True G219627
TU250469 lncRNA downstream 123182 5801184 ~ 5804117 (-) False LOC110490524
TU250590 lncRNA upstream 43923 5976879 ~ 5981909 (-) True G219680
TU250608 lncRNA upstream 85366 6018322 ~ 6021156 (-) True G219698
TU250610 lncRNA upstream 90501 6023457 ~ 6023702 (-) True G219700
TU250580 lncRNA upstream 91039 6023995 ~ 6024216 (-) True G219671
TU250611 lncRNA upstream 92523 6025479 ~ 6025829 (-) True G219701
XM_036966830.1 mRNA downstream 1628 5908171 ~ 5925671 (-) True LOC110508150
XM_036966839.1 mRNA downstream 1629 5908171 ~ 5925670 (-) False LOC110508150
XR_005040262.1 mRNA downstream 9498 5913078 ~ 5917801 (-) False LOC110508233
XR_005040263.1 mRNA downstream 9498 5913078 ~ 5917801 (-) False LOC110508233
XR_005040265.1 mRNA downstream 9498 5913078 ~ 5917801 (-) False LOC110508233
XM_036966889.1 mRNA upstream 18601 5951557 ~ 5957032 (-) False LOC110520778
XR_005040269.1 mRNA upstream 18601 5951557 ~ 5957032 (-) True LOC110520778
XM_021620871.2 mRNA upstream 225074 6158030 ~ 6173396 (-) True LOC110535692
trnat-cgu-2 mRNA upstream 290841 6223797 ~ 6223869 (-) True trnat-cgu-2
XM_036966940.1 mRNA upstream 295956 6228912 ~ 6247838 (-) False LOC110535643
TU250494 other downstream 175205 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 178585 5748158 ~ 5748714 (-) True G219591
TU250378 other downstream 239008 5687725 ~ 5688291 (-) True G219500
TU250121 other downstream 917893 5008084 ~ 5009406 (-) True G219290
TU250018 other downstream 1155248 4770350 ~ 4772051 (-) True G219200
TU250699 other upstream 396646 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other upstream 400012 6332968 ~ 6338813 (-) True G219820
TU250797 other upstream 553544 6486500 ~ 6491015 (-) True LOC110507902
TU251084 other upstream 997035 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 997035 6929991 ~ 6932356 (-) False LOC110508304

Expression Profile