RNA id: XM_036966926.1


Basic Information

Item Value
RNA id XM_036966926.1
length 2664
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110535756
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6129251 ~ 6157940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTCAGCCTCAAGGGGCGGACCGTTCTCTCTGTGGGCTAAGGTTTTAGATCGGAAGTAATTCGTCTGCGCGCAAGGAAGAAAGTTGTTTACAAACAGAAGAGAAAGTTGGACATGTAGCTAACTCGAGACAAACAGTTACGAAATAGCCTAGAAGAATGCATCTCCCAAGTTTTACACTCATGGGTTTTTACTTTAAGTAGCTGAGTAAGAGGAGCACGTGTGTATGGTTGCAGGTGTGAGAACACACCCGGGGTCAGATGTCAGGGAGGATGTCAGAGGAAGGGGGCAAGCTGACGCTGAGGCGTCTTGAAGGGCCAATCAACAAGTTCACTAAAGTAGCCCTGCCGACAGACCTAGAAAgactacagagacaccacagcaATATACTGAAgTTCCAGCATAGTGGACAATGGGATCGCCTTCACCAGGAGCACATCAATGCCAGCCGCACTGTGCAGcaGTTGAGGGCTAAtgttagagagatggagaagcTGTGTGGACATATCCGCCCGGAGGACGGCCCAGCCCTGGAGAGGCTGGTTCAGCCAATCAGAGACCGAGCATCTGCTGCCGTGCAAGACTTCCTACTCCTGCATTCTAACCCCGCCCCTCTGCCACAGGCACCACGCCTCCCAGACCACTCATCCTCAGGTGGTTCCCATGGTGATGATGTGGGCAGGGAGCCCCCTCCTGTTAATCAAACGCAGCTCCTCCTCCCAGTGATCCCCCTCAATGAGAGTGCTGCTGAGTCCTGGGACACTCTGGAGGAGGACCTGAAGGAGCTTAGCGGTTTGGTGACAGAGTTCTCTCTGCTGGTCCATgCGGTGGGCTACAGGCTGGCAGTGTTACCCGTGGCGGGGGCAGTGTTAGGGGGGGTGTTGGGTGGGCCGCTGGGCCTACTGGTGGGGTTCAAGGCAGCGGGGGTGGCAGCAGCGCTTGGAGGGGGGGCTCTGGGGTTTGCAGGGGGGAACCTGGTCCAGAAGAAACGCAGAGCTAGAGTACAGTCCCAGATGAACCAGCTCACTGCACCCCCTACGGAACCAGAACCACCGCTGGACAAGGACAAGTGACCTCTGATTGGTCGTGAAGGGACCTCTGACCTCCAGAAGCTTACACTGGTCCTGGTACTGCCCGACTATATTGCAGACGCATGCTAGACCTTatatatcagctaaccacatcatatgataTAGCAATCTGATGCACAGTTGAAGTGGcgcacaaccattggttgatgcaatgcAACGCCTGTGCATCTAGTCGGGTAGGAACTCAACCTAGATATCCCTCAGACTAACTGGCTGTCCACTCTAACAATCAGTTGTTTGACCAATAGATTTGCTCTCTTTACTGTGGTAATAAGGAACTCCTCCTCCTTCTCGCTGCCAATAGACGGAGGAGAGAGGTCTGTCAAGAGAGGCCTACTGTGAAGAGAAGCCTGCCACTGGGATCTACCACTTCCCAAtcaataagacttttaaacaTTGTAGGAGAGCCTTGAGGACCTGAGTGTGAAAGGGAGGTGTGAATGCTGTGTTAGTTGAGTGTGATGTATGTATATATGCTGGGTCTGTTGGCTTTGTATTTAAcactttaaagtaactgtccagtgtttccagatttctattaaATATGAGCtacacatttttacaatataaatgaaatagttttccttccaaaacCTTTTAAatatgttaaaaagcagcttttctgtgttggaatggtgtgggcgtatactGATCTTAAAAATATTCATGTGAGTGGatcgctgattggccagctcatcctccttaGGATGACGGCAAGTTGAGATACaagtttgttttttgttttctaCAATTAATATTTTGGCCACAAATACaagtataggatgagtcaacattatttgggtatgagatTACAGAACTTTCACTGCACAGTTACTTTAAGTGTATGATTATATATTATGAAAAGATGTGCATTATTAGTAGCAAACACTACAGCCTGCCTAGTTTTGTAACATAAGTCCTGCTGTTTGGTGCCTTTTAGTACAGACGGAGAGACGGTAGTTTTATTAAAGTCATGTTATTATGTGTTTCTTGGACGGACTTGTCTTAACTTCCCTCAGTCTTTATCAAATACACACTGTGCCAAAGCCAGACATTGCCTGGGTCGAGCAGTCACCCATCTCTCTAGTTTATGAACTTATTGATGTTTATCTGAGTCTGCCAATATGTCTGCTGCTCTGCTTAGAGTATACAGCTCAttaacagagggagagaagagagagggaggtataaaCAGCAGTAAATGTCAAGACTGTGTCCTGGTCTGAACCCTGCTGGAGAGGAGAGGCCTGCTCCCTCTGACAGACTGGAATGTGTCAATTTGACAGACTGGGGAGCAGAGAATAAGAGTGAGTGATTGTGATTGAGAAAGGTTAGGAGGATAAACACAGCTGTCCTGGGTGTACCAGGTAGAAAGTTGTGATGAGTGAGGCCAAAGTGTTCCTTCTTAAAAGTGCCACAAGAGAAACGGGTCACACTGATGTCATCTACTACAACAGTAGATGACCTCTGAACTCAGACCGGAACCAACTAAATATGGATGCTCTTAATCTATGTGATGATTTACTGGGGTTTTATATTGCCAAAGAAAACCAATAAAATCTGCTTCTGATGaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249311 lncRNA upstream 27905 6047450 ~ 6101346 (+) True G218689
TU249306 lncRNA upstream 36478 6088597 ~ 6092773 (+) True LOC110534158
TU249303 lncRNA upstream 104679 6024279 ~ 6024572 (+) True G218681
TU249300 lncRNA upstream 112955 6016017 ~ 6016296 (+) True G218678
TU249286 lncRNA upstream 142266 5983124 ~ 5986985 (+) True G218668
TU249398 lncRNA downstream 23049 6180989 ~ 6181211 (+) True G218759
TU249402 lncRNA downstream 28364 6186304 ~ 6188327 (+) True G218763
TU249405 lncRNA downstream 35799 6193739 ~ 6194610 (+) True G218766
TU249408 lncRNA downstream 42987 6200927 ~ 6201398 (+) True G218769
TU249421 lncRNA downstream 79629 6237569 ~ 6238625 (+) True G218780
XM_036966896.1 mRNA upstream 4852 6088505 ~ 6124399 (+) False LOC110534158
XM_036966901.1 mRNA upstream 4852 6088505 ~ 6124399 (+) False LOC110534158
XM_036966904.1 mRNA upstream 4852 6093404 ~ 6124399 (+) False LOC110534158
XM_036966893.1 mRNA upstream 165271 5957257 ~ 5963980 (+) False LOC110508220
XM_036966815.1 mRNA upstream 233718 5822391 ~ 5895533 (+) False LOC110508149
XM_036966930.1 mRNA downstream 16722 6174662 ~ 6228920 (+) False LOC110534148
XM_036966978.1 mRNA downstream 90329 6248269 ~ 6254241 (+) False LOC110535707
XM_036966932.1 mRNA downstream 101964 6259904 ~ 6277154 (+) False LOC110534143
XM_036966936.1 mRNA downstream 101964 6259904 ~ 6277154 (+) False LOC110534143
XM_036966968.1 mRNA downstream 119534 6277474 ~ 6290170 (+) False LOC110535685
TU249269 other upstream 165455 5957327 ~ 5963796 (+) True LOC110508220
TU249190 other upstream 233003 5890526 ~ 5896248 (+) False LOC110508149
TU249194 other upstream 233003 5890526 ~ 5896248 (+) False LOC110508149
TU249136 other upstream 380509 5748225 ~ 5748742 (+) True G218558
TU249013 other upstream 502673 5625707 ~ 5626578 (+) False LOC110535491
TU249367 other downstream 49563 6207503 ~ 6210967 (+) True LOC110534148
TU249355 other downstream 90138 6248078 ~ 6252483 (+) False LOC110535707
TU249356 other downstream 90138 6248078 ~ 6252483 (+) False LOC110535707
TU249357 other downstream 91434 6249374 ~ 6252483 (+) False LOC110535707
TU249358 other downstream 93056 6250996 ~ 6252483 (+) False LOC110535707

Expression Profile