RNA id: TCONS_00028662


Basic Information

Item Value
RNA id TCONS_00028662
length 950
RNA type mRNA
GC content 0.45
exon number 7
gene id XLOC_014480
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 4773710 ~ 4793333 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTTACAAAGCACAGCTGCGACAGCTATCTTGATCAGTTCTCCAGCCACGCAAATGCTCAAACTGATCCAGAATCAGGTTTACTGTCACCGTTCCAGATTCTGTTTAGAAGCTGCGGGAACCAAAATTCTGAACAGATCGttgtaAATATGTTTCCCTTCAGTAGATTTCCATACGTGACGGCTCTCTTCTCTTGTGGCATCTTCTTGCTGTTTATCTTCCTTCAAAACACGGTGATTTACAACTCCCTTCAAACGGTTTACTCCACCGGAGGTCTGTGCGCCTGTAATAAATGTGTGATGGATCTGAACGACGAAGACTGGTTCTTCATTCGCTTTAACCCTACAGTTCCAACTCTGCTGAACAGGAGAAACAGCGCAATGCGGTCGGACGTCTTCGAGTGGTGGCAGGGTCTGCAATCTGATTCACAAAAGGCTAATTTCTCAGATGTGGTGGACATATTGTTTTCTCTGTTCCCCGATGAAGAACACTATGTAGTCACTGATCCAAATCGATGCAGGATCTGCGCTGTGGTGGGAAACTCTGGGAACATCTTGGGATCCCATTATGGTCAACTAATAGACAGCCACGATTTTGTCATAAGGATAAATAAAGGCCCAACTAAAGGCTATGAGACGGATGTGGGGTCTAAGACCACTCACCGGATCATGTATCCCGAGAGCGCTATGGATTTGGACAACTCCACTCATCTGGTGCTTCTGCCCTTTAAGGTCAAAGACATGCAGTGGCTCATCAGTGTTTTCACTACAAAACACATCACAAGCACTTATTTAAAAGTGAGACCTACCATAAACGCTGATCGAGAGAAGGTGATGATCATCCATCCTGCCTTTATAAAATACGTCTATGAGAGCTGGCTGCGGAAACACGGCAGTTACCCATCAACCGGATTCATTACGCTGATATTTGCCCTGCATATCTGCGATCAG

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060321-1 Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human ST3GAL1 (ST3 beta-galactoside alpha-2,3-sialyltransferase 1).

Ensembl:

ensembl_id ENSDART00000146684

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029751 lncRNA downstream 69320 4689329 ~ 4705772 (-) True XLOC_014479
TCONS_00030141 lncRNA downstream 88461 4678242 ~ 4686631 (-) False XLOC_014478
TCONS_00030142 lncRNA downstream 88475 4681580 ~ 4686617 (-) False XLOC_014478
TCONS_00030143 lncRNA downstream 88590 4684501 ~ 4686502 (-) True XLOC_014478
TCONS_00030140 lncRNA downstream 214297 4556771 ~ 4560795 (-) True XLOC_014477
TCONS_00028668 lncRNA upstream 39534 4832863 ~ 4833548 (-) True XLOC_014481
TCONS_00030144 lncRNA upstream 288795 5082124 ~ 5091628 (-) False XLOC_014483
TCONS_00028671 lncRNA upstream 296087 5089416 ~ 5092618 (-) False XLOC_014483
TCONS_00030145 lncRNA upstream 296087 5089416 ~ 5093823 (-) True XLOC_014483
TCONS_00028676 lncRNA upstream 319947 5113276 ~ 5117909 (-) False XLOC_014485
TCONS_00028657 mRNA downstream 638005 4126905 ~ 4137087 (-) True XLOC_014473
TCONS_00028655 mRNA downstream 656717 4089494 ~ 4118375 (-) False XLOC_014472
TCONS_00028656 mRNA downstream 656721 4092824 ~ 4118371 (-) True XLOC_014472
TCONS_00028654 mRNA downstream 752042 4016702 ~ 4023050 (-) True XLOC_014471
TCONS_00028653 mRNA downstream 779656 3991835 ~ 3995436 (-) True XLOC_014470
TCONS_00028666 mRNA upstream 34922 4828251 ~ 4851411 (-) False XLOC_014481
TCONS_00028667 mRNA upstream 35286 4828615 ~ 4840688 (-) False XLOC_014481
TCONS_00028669 mRNA upstream 207556 5000885 ~ 5058908 (-) False XLOC_014482
TCONS_00028670 mRNA upstream 261491 5054820 ~ 5058515 (-) True XLOC_014482
TCONS_00028672 mRNA upstream 300889 5094218 ~ 5103313 (-) False XLOC_014484
TCONS_00028659 other downstream 293795 4481183 ~ 4481297 (-) True XLOC_014476
TCONS_00028658 other downstream 570733 4204245 ~ 4204359 (-) True XLOC_014474
TCONS_00028646 other downstream 849462 3919591 ~ 3925630 (-) False XLOC_014468
TCONS_00028645 other downstream 859018 3911801 ~ 3916074 (-) True XLOC_014467
TCONS_00028643 other downstream 859021 3909980 ~ 3916071 (-) False XLOC_014467
TCONS_00028690 other upstream 563916 5357245 ~ 5358443 (-) False XLOC_014491
TCONS_00028694 other upstream 570065 5363394 ~ 5364639 (-) True XLOC_014492
TCONS_00028699 other upstream 586264 5379593 ~ 5380707 (-) True XLOC_014494
TCONS_00028700 other upstream 622470 5415799 ~ 5415915 (-) True XLOC_014495
TCONS_00028706 other upstream 980592 5773921 ~ 5774035 (-) True XLOC_014501

Expression Profile

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