RNA id: TU249354


Basic Information

Item Value
RNA id TU249354
length 496
RNA type TUCP
GC content 0.39
exon number 4
gene id LOC110535707
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6248078 ~ 6254241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAGGAGGGGTTGTTGGGGGAGAGTCCGGGAAGCCGCTACCCTGATGAGTTCAGAGGGGGACAGATGGGAAGTGGATCCGGCCAAGGGTTGATGGGAGCTGTACCTGAAACCAGCAGCCTTCCGACCACGCTACTCAAATACCTGgACAATTTCCAGATCGAGAACGAGGGTGATGCTCAGATCGTGCTGAAGGTGACACAGAAGCTGACAGATGTCCTAATGGACTACAGACTTAGGAGTGTTTCCTCGCAGGGTCCTAGTATGAAGAGCGGTTTGTCGCTGGGCTCCATGAGCTACTCCGACTCTCCCAGAATGTCTAGCGGTAGTGACCGCTTCTCAGGTGGCTTCTCTGGGAACCTCTCTGGCCCTTCCAGATACTGATGGTCTATCCAGGTACTACAACTAACTGATCCATCCCCACTTGACACATCCACCTTCCTGGGGTAACCCATCCTCCGCCTCACCCCCAAGATATACCCTGAGTCCATGGGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249421 lncRNA upstream 13932 6237569 ~ 6238625 (+) True G218780
TU249408 lncRNA upstream 51159 6200927 ~ 6201398 (+) True G218769
TU249405 lncRNA upstream 57947 6193739 ~ 6194610 (+) True G218766
TU249402 lncRNA upstream 64230 6186304 ~ 6188327 (+) True G218763
TU249398 lncRNA upstream 71346 6180989 ~ 6181211 (+) True G218759
TU249426 lncRNA downstream 11457 6265048 ~ 6265311 (+) True G218783
TU249427 lncRNA downstream 12666 6266257 ~ 6266504 (+) True G218784
TU249435 lncRNA downstream 49675 6303266 ~ 6305269 (+) True G218791
TU249437 lncRNA downstream 52176 6305767 ~ 6307238 (+) False G218793
TU249438 lncRNA downstream 52176 6305767 ~ 6307238 (+) False G218793
XM_036966930.1 mRNA upstream 23637 6174662 ~ 6228920 (+) False LOC110534148
XM_036966926.1 mRNA upstream 94617 6129251 ~ 6157940 (+) False LOC110535756
XR_005040277.1 mRNA upstream 94617 6129252 ~ 6157940 (+) False LOC110535756
XM_036966922.1 mRNA upstream 94617 6129253 ~ 6157940 (+) False LOC110535756
XM_036966904.1 mRNA upstream 128158 6093404 ~ 6124399 (+) False LOC110534158
XM_036966932.1 mRNA downstream 6313 6259904 ~ 6277154 (+) False LOC110534143
XM_036966936.1 mRNA downstream 6313 6259904 ~ 6277154 (+) False LOC110534143
XM_036966968.1 mRNA downstream 23883 6277474 ~ 6290170 (+) False LOC110535685
XM_036966957.1 mRNA downstream 23947 6277538 ~ 6290170 (+) False LOC110535685
XM_036966955.1 mRNA downstream 24066 6277657 ~ 6290170 (+) False LOC110535685
TU249355 other upstream 74 6248078 ~ 6252483 (+) False LOC110535707
TU249356 other upstream 74 6248078 ~ 6252483 (+) False LOC110535707
TU249357 other upstream 74 6249374 ~ 6252483 (+) False LOC110535707
TU249358 other upstream 74 6250996 ~ 6252483 (+) False LOC110535707
TU249367 other upstream 41590 6207503 ~ 6210967 (+) True LOC110534148
TU249359 other downstream 6346 6259937 ~ 6262357 (+) True LOC110534143
TU249525 other downstream 196747 6450338 ~ 6455202 (+) True G218842
TU249596 other downstream 351731 6605322 ~ 6607009 (+) True LOC110520771
TU249650 other downstream 370993 6624584 ~ 6631601 (+) True LOC110507851
TU249685 other downstream 464037 6717628 ~ 6719163 (+) True G218971

Expression Profile