RNA id: XM_036967075.1


Basic Information

Item Value
RNA id XM_036967075.1
length 3415
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110508031
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6426134 ~ 6448961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCATCACAAAAAGGGAACATTCAGCCATTACACTGCGATGAGGTGTGCCGGAGATTTTGCATAGATTATCAAGCAATCAAGAAGTCACTAAAAATATCTGGAGTTGCTGAGCACACCTTTGCGCATAGGTGTCTGGGTGTGGGTGGCTGGATTCTTTGGGTTCTATACTGTTCTGGGGGTGTAGCTATAGGTTCTTTTCTATTACTTTGGGTGTAACTAGAGTAGTTTCTTTTTGTATTTATCCTGAAAATGACGGCTCAGGTAGACTACCTGGCGGTGTTGTTCACGACCACATCTGGCGCGAGCGGAGACCTCTTGGGTTCGGACGAGACGGAGCTCGAGCAGTTGGTGTGGCAGCTCGTGGACTTGAAGAACAAAAAGTTGGGAAAGGTGAATGAGGTGTTAATAAGGCCTGAGCACTCGGACCTTACAGAAGATtgtctgggggagagagaggacagcgagGAGTCTGTCTCTACAGTCACAGGCTTGGAGAACGCGATAAACCAGTTCCATCTGAGATTGACCAATGAGGTGAACAGCTTAGGCGCGGgcacgtcagtgtgtgtgtgtacggacgGGCAGCTCCACATTCGCCAGGTTCTCCACCCCGAAGCTGCGGGCAAGAACCTGGCACTGCCAGAATGTTTCAACTCCTTTTTTGACCTGAGGAAAGAGTTCAGGAAGCACTTCCCCTCTGTAGACACCAAGAGCCTGGAGGTGCAGTACATGGCAGAATCTCTCAGTGTAACTGTGGAGCCAGTAGCCATATTGGAGCCGCCGACCGTACTGGATCCAACGGCCGTGTTGGATCCGACGGCAATGTTGGATCCGACGGCCATGTTGTCACCGGTCACAGCAGCACTGCAGGTCCAGACCATGGCCAACATCGTTCTAGCCCTGCTATTGGAACCCTTATGTCACACATTCTCAAACCCAGAGAGAGTCACTGAGAAGTTTGAAAGTGGCACTTGcagtaagATGGAGCGTGTGTGTGACAACACAGTGATCAGAGCGAGGGGGTTGCCGTGGCAGTCATCTGACCAGGACATCGCTCGCTTCTTCAGAGGACTCAACATTGCCAAAGGTGGTGCTGCGTTGTGTCTGAACGCCCAGGGTCGGAGGAACGGAGAGGCTATGGTCCgcttcatcagtgaagagcacagaGACATGGCCCTGCAGAGACACAAACACCACATGGGCAACAGATACATAGAGGTGTACAAGGCAACAGGAGAGGACTTCCTTAAGATAGCAGGCGGTACCTCCAGTGAGGTGGCGTTGTTTCTGTCTCGCGAGGACCAGGTGATTGTCAGGATGAGAGGTCTTCCCTTCACCGCCACACCTGACCAGGTGCTGGCCTTCTTCTCCCAGGGGGAGGGGCCTAAAGAGGCGTGTCCTGTCAGTGGTGACAAGGATGGCATCCTATTTGTGCGTTTCCCTGATGGAAGGCCGACAGGCGACGCCTTTGTCCTATTCGCCAGTGAGGAGCATGCTCAGTGCGCTCTCAGGAAACACAAAGACATCCTGGGAAAGAGATACATTGAGCTGTTCAAGAGCACCGCCGCCGAGGTGCAACAGgtgttgaACAGGTACACGTCAGCCCCTCTGATCCCCGTGGCTCCAGCCCCCCTGGTGTCAATGTtgccctctgtgtctctgttgcCCTCTCCTGGTGGTGTGAGGGACTGCCTCAGGCTGAGGGGGCTGCCCTACACCGCCACCATAGAGGACATACTGGCTTTCCTAGGAGAATACACACACGACATCAGACCACACGGAGTACACATGGTGGTCAACCAACAGGGTCGTCCGTCAGGGGACTGTTTCATCCAGATGCGTTCAGCAGAGCGGGCTTTCTCTGCCTCCCAGCGGGTCCACAAGCAGGTGATGTCTGGTCCGGGCCAGGCTGGCAAGCGAGGGGTTAACAGCCGCTATGTGGAGGTGTTCCCCTGTAGCGCTGAAGAGATGGGTCTGGTGTTGATGGGAggctccctctcacacacacacattcacacacacacccggACCAGGAGTGGGACAGGGCTCAGCCCGCCGCCATGTAAGTCCAGACgtctgtctcctccctcctactCCTTCCCACCCATCCCTTCCATCATGCCGGCTGAGGCTGCCGGCCTCTTCCCTCCCATTGGGCAGGTGCTGCTGAGTCCCCGCCCCCTAGGACCTGGACACGCCTACTACCCAGCTAGCACTCAGCTCTACATGAACTACACTGCATACTATCCCAGtccccCAGGTTCTCCCAACACTATAGGTTActacccctcccccacccctctgcCCTCCCCTGGGGGAGTGGTCCGTATGCATGGCCTTGCCTATAAAGAACTGCTCAACACCATTCAGGGATACCAgagTCCTATGGAGGCATTGCCTGTACTGAGCAGTATGATTGGTCAGTCCAGCAGCGGTGATGCTCTGAtgcccttcccccctctcctgaCCAAGCAGGGAGGGCACTACCTGGACCTAAACATGCTGTAGAAGGCTCAAAGAtccacacactGGGCCACATTGGGGTTTCACCCAGATCTGGAGGGCCACAGTGAAAAGTGGTTATATTTCCTTTTTTTTATATAAGACATGGCTCTCTATATTAAACTGTGCCGAAAGTTTGACACTCCTTCACCACAAtatcacacacatgcacgcaccccccccccccccccaaggacaTGTGGGGGAATGTCCTGGCCTCCAGCTCTGATGTGTGTTCCCTGTCTTGAGTTTTGtggtatatacagtgtatatgcTTGAGAGCAGAAATGTATTTTATATCAGAGCTTTGCCTCAGCCAAACAGCAGCTCTGTCTTATATTGCACATAGTATTTTAAAAAAGCTTTCTAGAGAGACGTTATAAGATGTTACAACCACTTCAGGAGACGTCTGTTAGAAGTAGAGCTGCGTTTAGTACAAATTATTCATCTGAACCTTCATGACTTGCAtgcatttgtgtatgtgtgtaagtgcttgtgaatgtgtgtgtgtgtgtgtataagtgtgtggatgtgtgcgtaagtgcgtgagagagagagaggatgtgcatagtgcactactctctCTAGAtactatatgtatatattttattttatactgTCTGTCTAAAAACATATTACATTTTATTTCTTTATACTTTCTATAATTTTACAATCCAATACTAGAACGTTGTATTAGGAAGCCTCCTGCATGAAGAAGTTAGTAGTGCTAGCTACACTCAGATGTTTACATGTTATGGAAAATATAAAGCACTGCTAACCAATCAGATTACTATACAGATTATACTGTATATCAACAGCATAGTGTCTGACATAAAAGTTACATGTCAAATGCTGAATCACTCCCACACCCCTCCCATCTAACCTGTTTATGTTTGCCTAGTTCCACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249458 lncRNA upstream 19048 6344845 ~ 6407086 (+) True G218805
TU249460 lncRNA upstream 71654 6353777 ~ 6354480 (+) True G218807
TU249454 lncRNA upstream 83956 6341950 ~ 6342178 (+) True G218801
TU249447 lncRNA upstream 87366 6328378 ~ 6338768 (+) False G218798
TU249451 lncRNA upstream 92195 6328378 ~ 6333939 (+) True G218798
TU249523 lncRNA downstream 1377 6450338 ~ 6455202 (+) False G218842
TU249531 lncRNA downstream 60233 6509194 ~ 6510051 (+) True LOC110507908
TU249549 lncRNA downstream 67907 6516868 ~ 6545971 (+) True G218862
TU249591 lncRNA downstream 107816 6556777 ~ 6609484 (+) True G218892
TU249641 lncRNA downstream 149266 6598227 ~ 6599147 (+) True G218929
XM_036967042.1 mRNA upstream 26518 6377288 ~ 6399616 (+) True LOC110489435
XM_036966957.1 mRNA upstream 135964 6277538 ~ 6290170 (+) False LOC110535685
XM_021588519.2 mRNA downstream 43253 6492214 ~ 6496204 (+) True LOC110508070
XM_036967150.1 mRNA downstream 50584 6499545 ~ 6510342 (+) False LOC110507908
XM_021588331.2 mRNA downstream 50596 6499557 ~ 6510342 (+) False LOC110507908
XM_036967143.1 mRNA downstream 50596 6499557 ~ 6510342 (+) False LOC110507908
XM_036967156.1 mRNA downstream 64331 6513292 ~ 6516055 (+) False LOC110508080
TU249359 other upstream 163777 6259937 ~ 6262357 (+) True LOC110534143
TU249353 other upstream 172543 6252557 ~ 6253591 (+) False LOC110535707
TU249354 other upstream 172543 6252557 ~ 6253591 (+) True LOC110535707
TU249357 other upstream 173651 6249374 ~ 6252483 (+) False LOC110535707
TU249525 other downstream 1377 6450338 ~ 6455202 (+) True G218842
TU249596 other downstream 156361 6605322 ~ 6607009 (+) True LOC110520771
TU249650 other downstream 175623 6624584 ~ 6631601 (+) True LOC110507851
TU249685 other downstream 268667 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 345599 6794560 ~ 6807670 (+) True LOC110507732

Expression Profile