RNA id: XM_036967112.1


Basic Information

Item Value
RNA id XM_036967112.1
length 4114
RNA type mRNA
GC content 0.52
exon number 25
gene id LOC110507902
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6479543 ~ 6491729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTGACATTGGATTACAACATATTCTGTTAGGACACAGACCGGTACATTGATAGTAATGTGATTGTCTCGATCGGataagaaaatcacattttaattgGGGATGTAATTAGACAGGTTTCATTCTCTTCATCTGTCCTGGAATGGAACAACTGGAGATATCTGACTTTAAGGATGAGTACAGATGAACGAGGAGAAGAGACAATGAGATTGAGTCATTTGACGATTGAGATataggaaaggagacaaggagatgACGCTGCGAGCCCCTGACTGGACCATGGATGAGCCTCCTCACGATAGGACATGTGGAAGCTATGCTGAGACACCATTCATTTTCTCATATGAATAAGTAACATAGGCTACttcaaggaaggaaggaaagaatgaTTCGTTCCCAAAGTAGTCCCAATGAACAAAACCGGAGGGACTCCACTCTTTTGCGGACCAGCCAAGAACCTAGACCGAGTTTCACTTTCACATCTCTGGAAGTTTAGCTTTTTTTCAAAGTATATTCCACCCCTTGTTCTGGTGAATCAGAGTGTCACTCTACAGTTCTGTAGGGCTGCGTGAACAGATTACATGATATCTTCTTCCTCTGATGAAAGAATATGATATGCTGTAGGCTACAGCGGGGGTGGGTGAGGACCAGAACACGCATCCATCAAGGCGGGAGCGCGCATTATGAAGAGGCGGGGCAGCGGGAATATCTCTTTCCGGATATTTACCTCCACCTGCCCGCGCGACGCGCCCAGTTCCAAGGTTTTTAACAGCGGTAGTATCAACGGACATGACAAAGTTCCCAAATCCAGGACTACTGAGAAGCAGGATGCAGGTGAGGTTTTGCTGGAGCAGGTGTGTAACCAGCTGGGTCTGCTGGAGAGACACTTCTTCAGTCTGCAGCTACGAGACTCCAACACCACCATCGTCACTCAAACACACTCTCCTAGGTGGCTGGAGGCCAACAAACCACTGAAGAAGCAGCTGAAAGGAGTTGTCTCTCCATTCTACCTGACCCTCCGAGTCCGATTCTTCATCTCAGACCCCAACTCTCTACAGCATGACCAGACCAGACATATGTACTTCCTCCAGATCAGGAGTGACATCAGAGAGGGCAGgTTGAAGTGTCCTCTGAGTGCAGCTGTAGTACTGGCCTCCTATGCTGTGCAGTctGAGCTAGGTGACTACTCCCCAGACCTTCTCCCTGGTTACCTGTCCAAAAGCCACTTCCTCCCAGAGCAGGATGATGACTTCCTGTCTAGAGTAGAGGCTCTGTACCCAGGGCACAGGGGGCTGAAGGAGAGTGAGGCAGAGCTGTGTTTTCTCAACACAGCAAGAACTCTGGAGATGTATGGAGTGGAGCTACACACTGCCATGgaCTCTGACAGTTCCCCCCTATTGGTGGGATTGGCCTCAGGGGGCGTGGCTATCTTCTGTAACATGATTTGCTCCAGTTTCTTCCCCTGGGTGAACATCATCAAGATATCCTTCAAGAGGAAACGCTTCCTTATGCATCTCAGACGCAAACATggggagACGCAGGACTGTGTAGTGAGCCTGGTCCTGCCATGCCCCAGGGCCTGTAAGAACCTGTGGAGGTCATGTGTGGACCATCACTGCTTCTTCTACACCAACCTGGCAACCCGTAGCCCACACCACACCAACCTGGCAACCCAGATACACaacaagctgctcccacaacactGGGCCTTGGGCAGCACTAAAACAGacagTGGTCCAGTGTGTAAGAAAGTGATGGGTGGGATGGAGTGGAACCCAGCTCTGAGGGGATCCACCTCGTCAGAACACCTGGAGACCAAGAGCCTACCGTCCCGATCCCCCCCGCTCACACCTAACTGgcGGAGTCCTCGTGTGCGTCATGGCGCCCGTAAACCCCGCCCCTCCTCAGTGGAGCTGAACAATGACCTGCGAGATGTGTCGGAGGGGGAGGATGTCTTTTACACCTACAGGGTCTCCCTCAGTAGCAGCAGGGGCAGCCAGGAGGGCACGCCtacacacagTGTTTCTGGCACTCACAGCCAAGGAGGTGGATGGTCGCAGGTTTATGACATCGGCACAGGAGAGGAAGACATTAAGGCCACCTCTCACTACCGGGACAAGCGTGCTCTTGGTGATGGCGACCTGCTATTGGTGCGTCTCGCTCCTGATCACGATGGAAAGTTTGGTTTCAATGTCAAAGGTGGCGTGGACCAGAAGATGTCCCTGGCCATATCCCAGGTCAACCCTGACTCCCCTGCGGGGCGGGTTGAGCCAAGGTTGTTGGAAGGTGACCAGGTAGTGCTGATCAACGGTCGCGACATCTCTGAACACACGCATGACCAGGTGGTCATGTTTATAAGAGCCAGCAGAGAGTCCCACTCCAGAGAACTGGCTCTGCTTATACGACGCAAAGgtcCAGGGCGTGTGGCCCCCCTGCTGCAGTTTCCCTCTGCCCTGTCTCTGACTGGCCAATCACACGGTGATCCACTGCTTCTGCCTGGCCAATCAGAACAAGGCCAGACACTTGAAGAGTCCATGAAACAACTGGAGAGGGGAATCCAGACAGGCACTCTCACCTTCCACTTCGAGaaCCTGTACATGAGGAAGCCTGGCCTGTCAGTAGCCTGCGCTCGTCTCCCTGAGAACACAGACAAGAACAGATACAAGGACGTGCTGCCCTATGACATCTCCAGAGTGGTACTTCAGGACCAAGAGGACTACATCAATGCAAGCCACATCACGgtgaTGCCCCCAGGGTCTGGTGTGTGTCTGCGCTACATTGCAGCTCAAGGACCGCTGCCTCAGACCTGCACTCACTTCTGGCAGAGTGTGtgggagcaacacacacacaccatcatcatGCTCACCACACTCACCGAGAGAGGACGGactaAGTGCCACCAGTACTGGCCACACCCTCCTGAAGTGAGGGATTATGGGTACCTGAGGGTCAGCTGCCACTCTGAGGAATGCAACCTGGCCTACGTCACACGCCAattcaccctcacacacacacagCTGGGAGAGGAGCGTTCGGTGACCCACCTGCAGTATGTAGCATGGCCAGACCATGGTGTACCTGATGACCCCTCAGACTTCCTGCTGTTCATCACCTCtgttagagagaggaggacaggagacacacCACTTATGGTGcacTGCAGCGCAGGGATTGGGCGTACAGGTGTTCTCATTACCATGGAGACGGCGTTGTCGCTGTTGGAGAGCGGTCGACCTGTGTTCCCTCTGGACATCATCAGGACGCTCCGAGACCAGAGGGCCATGATGATCCAgaccacgTGTCAGTTCCGGTTTATGTGTGAGGCCATCCTGcgtgtctacagagagagagaagagagtattCTGCAGCACCACCCTCAGCACTGCTAATGGACCATTAACAGGAGGATGGGGGGACAGCTAGCCACAGCACTAGGCAAACAGGAAGATGGGGGGACAGCTAGCCACAATGCTAGGCTAACAGGAGGTGGGGGGACAGCTATCCACAATGCTAGGCTAACAGAAGGATGGCTAGCCACAGCACTAGGCTAACAGGTGGGGGGACAGCTATCCACAATGCTAGGCTAACAGGAGAAGAGGACTGCTAGGCTAACAGGAGAAGAGGACAGCTAGGCTGTAGCCTTAGAGAGCCATAGCACTCCACTAGCCTTAAGTGCTCGGCAACGGCTAGCCTTCTGTTGCTACAGCACATAACGAGCCATAGTGCCGAATGTGCTCAGCTAGTCCTATCCTTATGTTTGCCATAGAGCACCGCTAGCAGGAAGGACCATGTACTGCAAAggtctttttaaaatgtatttaaaaaaatatatataataattctCTGGGACCAAAGTGCTACTGTATGAGTGACTGAAGACTGTATCTCAGTTCCTCTTGAGTGGCGGCTATATAGCTTTCCTAATAGTGGGTTGAGGCAAGTTCCTCCTGAGCGGAGGCTATAGGATTGACTGGTCTGTCTGCATTGTTGGGAGAGTGTTGAGGCTTTCGGTGGATTCACAGTAGAGATGAACACTGCCAGAGCCACCACACACTACCCCCGATCCCACCTTCCCTAAATTATTGACACACTGAATAAACACACTGACATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250752 lncRNA downstream 72475 6344657 ~ 6407068 (-) False G219822
TU250753 lncRNA downstream 72475 6405208 ~ 6407068 (-) True G219822
TU250784 lncRNA downstream 93334 6385989 ~ 6386209 (-) True G219847
TU250745 lncRNA downstream 147549 6327177 ~ 6331994 (-) True G219819
TU250736 lncRNA downstream 179717 6299330 ~ 6299826 (-) True G219811
TU250792 lncRNA upstream 4969 6496695 ~ 6497960 (-) True cf191
TU250920 lncRNA upstream 111456 6603182 ~ 6607008 (-) True G219970
TU250944 lncRNA upstream 147214 6638940 ~ 6642155 (-) True G219988
TU250955 lncRNA upstream 168019 6659745 ~ 6660111 (-) True G219999
TU250881 lncRNA upstream 220454 6712180 ~ 6783455 (-) False G219933
XM_036967155.1 mRNA downstream 135 6454833 ~ 6479408 (-) True epb41l4b
XR_005040318.1 mRNA downstream 9409 6468351 ~ 6470134 (-) True LOC110508108
XM_036967015.1 mRNA downstream 54249 6398174 ~ 6425294 (-) False LOC110507893
XM_036967024.1 mRNA downstream 54249 6398314 ~ 6425294 (-) False LOC110507893
XM_036967033.1 mRNA downstream 54249 6398314 ~ 6425294 (-) True LOC110507893
XM_036963488.1 mRNA upstream 4969 6496695 ~ 6498544 (-) False cf191
XM_021581728.2 mRNA upstream 4969 6496695 ~ 6498847 (-) False cf191
NM_001160659.1 mRNA upstream 4970 6496696 ~ 6499580 (-) False cf191
XM_036975428.1 mRNA upstream 35449 6527175 ~ 6550398 (-) True LOC110508127
XM_036967161.1 mRNA upstream 130445 6622171 ~ 6623917 (-) False LOC110507876
TU250699 other downstream 137930 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other downstream 140730 6332968 ~ 6338813 (-) True G219820
TU250494 other downstream 727449 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 730829 5748158 ~ 5748714 (-) True G219591
TU250378 other downstream 791252 5687725 ~ 5688291 (-) True G219500
TU251084 other upstream 438265 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 438265 6929991 ~ 6932356 (-) False LOC110508304
TU251088 other upstream 438265 6929991 ~ 6931881 (-) False LOC110508304
TU251092 other upstream 438265 6929991 ~ 6932356 (-) True LOC110508304
TU251203 other upstream 457072 6948798 ~ 6950956 (-) True LOC118964351

Expression Profile