RNA id: XM_021588331.2


Basic Information

Item Value
RNA id XM_021588331.2
length 2956
RNA type mRNA
GC content 0.56
exon number 21
gene id LOC110507908
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6499545 ~ 6510342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGATCATCGATAGTTGTGTGCTCAAGTTTACCGAGATCCAAAGTTGTCAGGCAGCGTTCATTGAACGCATGCGCATTGCATCCACTATCCAGCTCAAAATAAGAGTTAAAACAGAAACGAGtgcaggaggaggagagcagggagagatgaCTGACACCCCGCCCAGCGATGGCCCCTCCCAGGGGGCAGAGTTTGACATGATGGGCGCTCTGGACTGGCAGGACGGTATCGCCACACTGCCTGGCAGCGACATcaagTTCCGTATGACAGAGTTTGGAACTTTGGAGATCGTGACAGAGCCAGAGGTCAAAGAGTCAGGGCCAACCCCCCAGAACCCCGCCCAGTCGAAAAGCCCCACCCCTCCACCAGAGGCCCAATCAGAGAGCAGTGCAGCCTCTTCTGCAGCCAAGGAAGTCCAGCCACTTGCACCTAAGGCTCAAGGCCCTGTGCTTCTGTCTCTAGAGGAGGGTCCCACTGTGGAGGGTCCCATGGCGGAGGAGCCCAGGGCGGAGGTAGGCCCCGAGGCGGAGGGAGGCCCCAGGGCTGTGATGGCTAGCTGTAGGTCGTGTGGGGGCTCCGGTCCACTGGAGAGTTTCCTCCAGGGCAAATACTGCAGCTCCATTTGTGTCCAGCCCTCCAGTGGCAGGTCATCACCCagagagcggagggagagagaggggggggaggggggactgGGGAAACGagtgaggaagaagaggaagatctACATGGACTCTGGTGATGAAGAGGAAGACAaccaggaggaggaagaggacAAGTCCAAGGCTGTCAAAGGGAGGAGAGCTGCTAAGCTGGCCAAGCTAGTGACAGCCCCACCCAATAAGAAGCGACCCTGGAGCTGGCCCTCCtacatggaggaggagaaggctaTAGCTGCCCCCCTTAAACTGTTCAAGGAGCACCAGTCGTTCCCTCAGAGCAGGAATGCCTTCAAAGTGGGGATGAAGTTAGAAGGACTGGACCCCTGtcacccctctctgttctgtGTGCTCAGTGTTGCTGAGatcCAGGGTTATAGGGTAAGGCTTCATTTCGACGGGTATCCAGAGTGCTATGACTTCTGGGTAAATGCTGACACCTGGGATGTGAAGCCGGCGGGCTGGTGTGAGAAGATGGGACACAAGCTGCTACTGCCTaaagGTTGTAAGGATGGGGAGTTCAACTGGAACATGTATGTGAAGAACTGCAGAGGTCAGCTGGCCCCCAAACACCTCTTCAAGAGCCTCAACACGtcGGTGACTCCGTCAGGGTTCCGTGCGGGTATGAAGCTAGAGGCGGTGGATAAGAAGAACCCATATCTGATCTGCGTAGCGTCCATCGCGGCTGCTGTTGACAACAGACTCCTCATACACTTTGACAACTGGGACGACACCTATGACTACTGGTGTGATGCCAGCAGTCCCTACATCCACCCTGTAGGCTACTGTGAGGAGGCTGAGCTGACCCTCACCACCCCtgctgAGTATAAGCACCCGAGGAGTTTTTCCTGGGATAAATACATGGAGGAGACTGGCACACAGGCAGCCCCTGCACGTGCCTTCAAACTGCGTCCGTGCCATGGGTTCCAGGCTGGAATGAAGCTGGAAGCTGTCGATAAGAGGAATCCCATGCTCATCCGCGTAGCAACCATCGCAGAGGTGGAGGACCACCGACTGAGGatCCATTTTGATGGCTGGAGTGAGGAGTACGACTACTGGGTGGATGCTGACTGCCCAGACCTGCACCCTGTGGGCTGGTGTCAGAAGACTAGTCATCCCCTACAACACCCCTCCAATGGCTCCACTGATATGCTGGTCCTCCCAGGGCAGGGCTGTCCTACCCCAGGATGCAATGGGGTAGGTCACATCCGAGGACCCCGCTACGGAACCCACTACACgggggtgagCTGTCCGTACTCGGAGATGAACCTGAACAGGGAGGGCCAGGTACCAGACCGTCTGAGTGGAGAACGACCTATGACCCTGAGTGGGCCTCATCACCGTGGGCGACGCCCAGACCCTCCTCCACACACCCAGACAAACAGCCCCACCACACCGGAGCAGCCCGAGCCTGCAGACGACTCCCCTCAGACCAGtgtaaCTAGGAGGCCGACGGTTGACGAGGGCGAACAATCCAGGTGCAGCAGTCAGAGTGAGCCACCAGGGGGCTCCACTGAGCCCATCAACGACGGAGCCAAGGCCAAGAGGTCTGCTCCAGTCCCAAAGTATCTGAAGCTGCACGTCGTCAAGCAGGAGAGTGGAGATGGGAAAGactccctgtctctccagcaGGCGCTCCATGAGTCAGTGTTCTCCCCGGGtggctcctcctctccccctcacagGGTGGCTCTGTGCTGGGACAAACACTGCCAGCTGCTCCCTGAGGTCCTGGGCCTCACAGCTAAGAGAGTTGCAACCTGGACCGCCGACGAGGTGGCCAGTTTTGTCAAAGGGCTCCCAGGCTGCAAAGAGCATGCTGCCACCTTCAGGACAGAGCAAATGGATGGAGAGGCCTTCCTGCTTCTCACCCAAGCAGACATAGTCAAGATCCTGTCAATCAAACTAGGCCCTGCCCTCAAGATATACAACGCCATACTCATGCTGAAGAACGCTGATGAGGAGTGAGACGCCCCCTCACGCTTCATTTCCTCCCACACCCGACCGCTGTATCTGAATAGTCTAGAGAAGTTTAATCTCCTTTTTTTGTCTCCTCACCTTATCCTCTTTGgtcttcatctgcactgatctgagCCCGTAGGATAGGTCAGAGCAACGTAATGGATGGCCACCAGGAATCTGCTTTCAGCTATCCTGTTCTTCCACAtcagtgtagaggagtagagagaatgtacctggtgtcagtgtagaggagtagagaggatgtacctggtgtcagtgtagaggagtagagaggatgtacctggtgtcagtgtagaggagtagagaggatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249523 lncRNA upstream 44355 6450338 ~ 6455202 (+) False G218842
TU249514 lncRNA upstream 59911 6434447 ~ 6439646 (+) True G218839
TU249458 lncRNA upstream 92471 6344845 ~ 6407086 (+) True G218805
TU249460 lncRNA upstream 145077 6353777 ~ 6354480 (+) True G218807
TU249454 lncRNA upstream 157379 6341950 ~ 6342178 (+) True G218801
TU249549 lncRNA downstream 6526 6516868 ~ 6545971 (+) True G218862
TU249591 lncRNA downstream 46435 6556777 ~ 6609484 (+) True G218892
TU249641 lncRNA downstream 87885 6598227 ~ 6599147 (+) True G218929
TU249680 lncRNA downstream 190506 6700848 ~ 6701347 (+) True G218966
TU249700 lncRNA downstream 224678 6735020 ~ 6735498 (+) True G218986
XM_021588519.2 mRNA upstream 3353 6492214 ~ 6496204 (+) True LOC110508070
XM_036967075.1 mRNA upstream 50596 6426134 ~ 6448961 (+) False LOC110508031
XM_036967156.1 mRNA downstream 2950 6513292 ~ 6516055 (+) False LOC110508080
XM_036967157.1 mRNA downstream 2955 6513297 ~ 6527389 (+) True LOC110508080
XM_036967159.1 mRNA downstream 50647 6560989 ~ 6607009 (+) False LOC110520771
XM_036967158.1 mRNA downstream 50648 6560990 ~ 6607009 (+) False LOC110520771
XM_021588246.2 mRNA downstream 100757 6611099 ~ 6620958 (+) False nmt2
TU249525 other upstream 44355 6450338 ~ 6455202 (+) True G218842
TU249359 other upstream 237200 6259937 ~ 6262357 (+) True LOC110534143
TU249353 other upstream 245966 6252557 ~ 6253591 (+) False LOC110535707
TU249354 other upstream 245966 6252557 ~ 6253591 (+) True LOC110535707
TU249358 other upstream 247074 6250996 ~ 6252483 (+) False LOC110535707
TU249596 other downstream 94980 6605322 ~ 6607009 (+) True LOC110520771
TU249650 other downstream 114242 6624584 ~ 6631601 (+) True LOC110507851
TU249685 other downstream 207286 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 284218 6794560 ~ 6807670 (+) True LOC110507732
TU251120 other downstream 428258 6938600 ~ 6944979 (+) True LOC110520781

Expression Profile