RNA id: XM_036967157.1


Basic Information

Item Value
RNA id XM_036967157.1
length 2458
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110508080
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6513292 ~ 6527389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAGATCTCGCATGCGCCGTAGTAGCCTACTCGCCGCTTTAAACCAAGGCTGGACAGATGTTAATATGCAGCCTGGTTGAGGGGTGAAACTCCTGGAAAACATTTTAAAGAGGGAGCTGAAGAGTCAACGCTGATCATATTAATGTAGGGACAAAATAAATAACGGGCATCATGTTGAGAAAATAGTTCCAGATATGGCAGGAGCGACGCGGAAATGTCCACAACCGAGCAACAGCCAAATCGAGATGAGGATGATCAGGAGGAGCAACGGGAGGAGGGGCCTCTGCAGTGTTTCCGCTGTGACCTGGGCTTCTGGGATGCCTGCTACACCACCAAAACCAACTGCAATATCGGAGAGAAGTGCTACACTGGCCGAGGGAAGGCAGGTGATGTGCTGGATGTTAAGTTGCTGGGTTGTGTCAAGGCGAAGGAGTGTGAGCTGGTGACCAATGTGGAGATCTTCTCCAACACAACCATCTACATGATGACAAGGCACTGCTGCGACACACACTTCTGCAACACCGGACACACACTACCCCTCAACACACTTCTCTCCCTGTCACTGACTACAATAACcatcatccacctctcctctccctgacagTGACTACAATAACCATGATCCTCACCTTCAACAGACTACAATAACCACCACGCATCATAAAGTCCCCAGCAGCACACATTTATTCAATTTTCTGTTAATATTCTGTGTTTACTTGTCAAGGAATATGGACAGTAATTAACATATGTGGATGTGCCAGATTGAGGCAAAAGTCTCATGTTCAACCGTTAGAAGCTGTCTCTGGGCTTGGGAAAATTGGTTAGATGGTTTTATGGAATTcaatttttaataaatgtaattTTCTCATTCTGTTGTTGGCATAAACTACAAAAGGAGACTGGATTTTATTTTATCATATTTATAGAACATTCTGAATTGTAACTGAATAACATAATTCAAATTTACATTGTCCTCAATCTTGGTTGGCATATTTTAAACACGTCAAAATTACTTTTATGTTCTCCTCCAAACCTAAATATTTCCATAGAGAATACTACAGTATTTCCCATTGACTTTAGTGTTATGGTAAATCCTAAAGTAGTATGCATCAATCTCTCAGACCCATattcacagatctaggatcatctTAACCTCTCTAAAACCATCAGCATCTTGGGGCAACTTCCTCCTACAGTCAGTGAAGCTGAGGTCATACTGGTATACAGTAGTGTTGCTGTTACATAGACAACAGCAGTACTGGTATACAGTAGCATTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGAGTTGCTGTTAGACAGACAACAGTAGCGTTGCTGTTAGACAGACAACAGTAGTGTTGCTGTTAGAGCAGGTCTCCTCCAGAGGGAAGCAGCTCCTCCTTCATGTAGCGCTGCAGATCCACACTCTGGTCCTCAAGGTTCACACACAGAAACTTCttcaccacacaaacacacctgacagggacacacacacaaagaaaacacCTGTGGGTGATTATGCGTATGTATTGCAGGCAGAATAACTTATATAAATGTTCATCTGAGCCATCTTTGTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249531 lncRNA upstream 3246 6509194 ~ 6510051 (+) True LOC110507908
TU249523 lncRNA upstream 58095 6450338 ~ 6455202 (+) False G218842
TU249514 lncRNA upstream 73651 6434447 ~ 6439646 (+) True G218839
TU249458 lncRNA upstream 106211 6344845 ~ 6407086 (+) True G218805
TU249591 lncRNA downstream 29388 6556777 ~ 6609484 (+) True G218892
TU249641 lncRNA downstream 70838 6598227 ~ 6599147 (+) True G218929
TU249680 lncRNA downstream 173459 6700848 ~ 6701347 (+) True G218966
TU249700 lncRNA downstream 207631 6735020 ~ 6735498 (+) True G218986
TU249611 lncRNA downstream 244950 6772339 ~ 6773043 (+) True LOC110507743
XM_036967150.1 mRNA upstream 2955 6499545 ~ 6510342 (+) False LOC110507908
XM_021588331.2 mRNA upstream 2955 6499557 ~ 6510342 (+) False LOC110507908
XM_036967143.1 mRNA upstream 2955 6499557 ~ 6510342 (+) False LOC110507908
XM_021588519.2 mRNA upstream 17093 6492214 ~ 6496204 (+) True LOC110508070
XM_036967094.1 mRNA upstream 64336 6426134 ~ 6448961 (+) True LOC110508031
XM_036967159.1 mRNA downstream 33600 6560989 ~ 6607009 (+) False LOC110520771
XM_036967158.1 mRNA downstream 33601 6560990 ~ 6607009 (+) False LOC110520771
XM_021588246.2 mRNA downstream 83710 6611099 ~ 6620958 (+) False nmt2
XM_036967160.1 mRNA downstream 84024 6611413 ~ 6620958 (+) False nmt2
XM_021588254.2 mRNA downstream 84137 6611526 ~ 6620958 (+) True nmt2
TU249525 other upstream 58095 6450338 ~ 6455202 (+) True G218842
TU249359 other upstream 250940 6259937 ~ 6262357 (+) True LOC110534143
TU249353 other upstream 259706 6252557 ~ 6253591 (+) False LOC110535707
TU249354 other upstream 259706 6252557 ~ 6253591 (+) True LOC110535707
TU249358 other upstream 260814 6250996 ~ 6252483 (+) False LOC110535707
TU249596 other downstream 77933 6605322 ~ 6607009 (+) True LOC110520771
TU249650 other downstream 97195 6624584 ~ 6631601 (+) True LOC110507851
TU249685 other downstream 190239 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 267171 6794560 ~ 6807670 (+) True LOC110507732
TU251120 other downstream 411211 6938600 ~ 6944979 (+) True LOC110520781

Expression Profile