RNA id: XM_036967159.1


Basic Information

Item Value
RNA id XM_036967159.1
length 4946
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC110520771
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6560989 ~ 6607009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGTGGTCAGACAACCACTTCAGTGAGTCGCCTGGAGATGGCGGTCAAACCCCACAAATGATTCTGCTAGGCGCCTGTTGGGGCAGCGTCTGGTGTCGGAATAGTTAACGTGGGGCCGCCCTGGCTTCAGtgactttctttattttttaagaaaaaaaaagaacCGACGGAGCAGCAGGAGGGGTGGGATGCAGAACTGAACAGGACATACTGAAGGAGAAAATAGAGGGAACGCTAATGCTACAAAATATGGAGTCTTGCCCGATGTACATGTGTGTGGTTTACAATACATTGATGTAGCCTGccaatattttatatttatttgaactatttttttttgtgtgacatCTGCAATGACGAGGGTCGGGGTTTTGAGCAGGACCGCAGCGATTGTGCTCTGTCTTTTGGGATGCAATGTGTGGAAAGCGGTAACCAAAACCCTGCAAGATGACAACGCTCTAAAAGGATCGAGGGGTCAGTCCTGGGTTCAGTTCCAGCGTCGAGCCCTGAGCCTCCCTCCCAACTCGTCCTACAGCAATCTCACTGCCCTGCTGACTGTGGCCAATAACCCCAGCCACATCCAGCACTTCCCCTACCTACAGGGCCTGGGGGGCAACGGAACAGGAAGTGAGCGTAGGTTTGAGCTGACTCCAGtggcggccatctctgtccacCTATTTGCCAGTGAGGGGGTGGAGCTCCAGGTGAACTGCCCAATCagcatctccatctctctaccggCCAATTGCGGCCTGAAGGAGAACCAACACATCCCAGCCTGGAGGTTTGACCCCAGTCTAGgGGCCTGGTTGAAGAGCAGTCTGGGCTATGTCCAGAGGGAGGGAGACCAGCTCAGCCTAACCTACATCGCCCCTCAGCTGGGATACTGGGTGGCTGCCATGTCCCCACTAGACACAGGTCCAGTGGTGGCAAAGGACATCAGTACGTACCACACAGTCTTCCTATTGGCCATACTGGGAGGCATGGCTGTCATCCTCCTCTGCCTGCTCtgtctactactgtactactgcaggCGTGGTTGTGTGAAGCCTCGTCTGTCCCAGCGGAAGCTGACTCTGTCGTCTGGTCTGGAGGGCAGTAAGAGAGACCAGTCCACCTCCATGTCCCACCTCATTAACAGCGAGGTTCATTTGGAGCTGGTCTCTACGACAGCAGAACCCGACATGACCACGCCCATGCTCAAACCCTCCTCCTGCGATCGCCATGACCTGGTCTCCCATGGCAACCACAGTCGCATGTCTCTAGGAAACCACAGCCGAAGTCGTCATGGCTCGTCGCTAGGCAACCTGACGCCGCGCAGCAGAGATTACCGTCAGTCTGTGGAGACGTTCCCGTTTAAGTCAGCCCTCTCCGCCGGGACGGATGCCGGCTACCGCCAATCATACACCTCCATCTGCTCATCCATCAATCAGCTCCCAGATAGACTTTCCTCCTCAAATCAGGTGCAGGCGTCAGCAAGTCAATTGAGTGGTGTTGGGGAGGGCGGGACTAGTGTGCGTGAGGCTACCTCGCCCTGCTCCCCACCTGTCTCCCCTATCAGAGGGGAGGGGTGTGAGCGCAGACCCCCAGACTACCTCCTGTCCCGGTCTGTGGACCACCTGggctccctgcccctctccctccccaggcCGGGCCAGCTGCTGTGTTGTGGCTCCGTGGACCTGCTGAGTGGAGGAGACGGTTACCCCAGGAGGATCCGGCCCACCCTGGTGATCCCAGCCCACTACATGCGCCTGCCGGGGGAGCACCCGCTGTGTGGCCAGGCCCTGTTCTTACAGACTGACCAGCAGAGTGACCTGGAGACCATCCAGGCTGAGCTCAACGCCTCACACTCCCAGCAGCCCCTGGGGCAAACACACGCCGATTATGCTATTGCCTCAGCCAACCAGGGACAAGGAGAGGGGCAAGGGGAGTGGAGCAGCCTATCAGAGTCCCTGTCTATCCCGTCAGCACTTGGGCAGTCAGGGATTATGCAAATGAACGGCGAGGACACACTATTGGCTGAGAGGAAATTGATGGAACTGCGGGGAGGGAAGCCCCTCACACACCCGCGCGCCTGGTTCGTCTCATTGGACGGTCGGTCTAACGCCATCAGACACTCTTACATAGACTTGCAGCGGGCTGGGCAAGCCAAGGGGAATCCAGGTGGAGGAGGTAGCCATGGTAACAACAGTGGTGGTAGACATGTCAACGGAAACGATGCAAGTCTGGACTCCGGGGTGGACCTGAATGAGCCCAGAGCAGGgcggagggggagggaggtagagaggaaggtaggagagagggaaagagagaaagacagagagagggggaggacaaaGAGTGGCCCTCCTGCCATGGCCTACACCCAGCTGGTATATGTGGATGACCTGGAGGGGGAGACTCCTGAGTGTAGCCCCCAGGACAGCCCTTTAGGTCCAGGGTTGCAGAACACACAGGGACATCAACAAGTAgagcaggaggacagaggagaggggatgatacAGGAAGAGGctccttcacccctctcctccccctcctcctcctctccacccccacTCACAGAGACCGAGGGCGTGGTCTTCAGGACTGAGCATGACCAACCGGCCCTATTGTCTGTTGCCCCTGATGACcacggagaggaggaggaggaggagaagaagagccccTGGCAGAAGAGGGAGGAGCGCCCGCTATTGGCAGTCTTTAACCTCAAATAACCTCTGACCCTTGAACTATAACTTTActtcccctcccaccaccccACCCCAGAGTGACATGAAGAAGGATTGGCCAGCTATAGATCCAGATCATTCAGGAAGTACATCTGTACTGGGAGCTAAATGGAACTGTCAGTGAATGGAAACGATTGGAACAGTTGGAACTCCATACATTCTAATGTCTAATCCTTCCTGTGTATCATCATAGCCCCACACTACATGGACAGGCCACTGACTAGACATGCCATAGAGACTTTGTCTGAGTGATACAGATGAACTAAAAACAAACTTAACAACGCCAGAGAACATGTAATGCACAACTGCTATGCCTTTAGTAAATGAGCTGCGTCAGCAAACAGGGGCTGTGGAATAAAGCCAAAGCAATATGGTGGATGTCTACTGGCAGGTCTAGGTAGAAAGAGTAGTAGTGTTTTCAGATCAGTAACTAGGACAGGATATACATACAGCAGGAAAGGAAGCTACTCTAATGTATAATGCTGCACAGATCTACGATCAGTTTTCCCCCCACAGGTCTtaatttgggcggcaggtagcctagcagttagagcggTGGGCCAGTAACGCAAAGatcgctggttcgaatacccaagCCAAGacggtgaaaaatctgtcgatgtgcccttgagcaaggcacttaaccctgatttgctccaggggcgccgtactactatggctgcatctatccagtgtatgtgacaCTAAAACATATTTTGTTAGGTTTCAATTTTCCAACATTAGGGTACCTTagattagtgtgtgtgtaacTTCAGTTTCCCATCCACACGACTGGTGAATCAGATAATGGGATACAGCCCCCTCTGTTGGTGACTGTTGATATTGCAGCACTCTACCAGTGAAGTTTTAAATGAAGGTTTTGTGTGTTGAACCACTGACTTCGGCATACTTTGCTCTGAACGGCTGGCTATGCATCACTTTTATACAGTTGCTTGAGATGGCTTGTTTTGTAATTTTAAGTACTCTGTGATTTTAGTTGCCAAACTATTTTACTCAAATACGTTTATGCTATTTTCTACTCAGATATGTTTTATCGGTTTTTTTCCCTTACTGTAAGTACAGAGTTTTAACAGACACACACCCAAGCCTTTTCTCTGAAACCAAACCGCATCCTGACGTTTGGAAACCACTATAATCGACTTCCTCGTTTTccaagtgcctttgaacaagtTGACTCGTACACATCAGTTCAGCTAGCTATgtatttctcctctcccctgttgaGCTCTAACCCTCCActacctcatccctctctcctctcctccctctgtccctggcAGACAGCATGCAgaaaccccctctctcctctcctccctctgtccctggcAGACAGCATGCAgcaaccccctctctcctctccttcctttgtCCCTGGCAGACAGCATGCAgcaaccccctctctcctctcctccgtctgtCCCTGGCAGACAGCATGCAgcaaccccctctctcctctcctccctctgtccctggcAGACAGCATGCAgcaaccccctctctcctctcctccgtctgtCTCTGGCAGACAGCATGCAgcaaccccctctctcctctcctccgtctgtCCCTGGCAGACAGCATGCAgcaaccccctctctcctctcctccgtctgtCTCTGGCAGACAGCATGCAgcaaccccctctctcctctcctccctttgtcCCTGGCAGACAGCATGCAgcaaccccctctctcctctcctccctctgtccctggcAGACAGCATAcagcatccccctctctcctctcctcagtcacAAAGGGAGGATGCTGTGTGGCCATAGCTAGATTGTTTATTGACTTTTGCATCTGCctctgtgtgccagtgtgtggGCCCGTCTTTGTCTGTAGTCATGTCTTTCTGCACAAGCATGTGCCTGAGTGTTCATATCTGTGCGTGCAGacaatatactgtgtgtgtgtgtgtgtgtatgacagcaTATGACATCTGAGGCATTACAGTGTATATAGTTCTCTCCTCTACATGTTGACATGTGAGCTAGTGTTGTGAATGAcccttcatcccctctctctctctctctctctctctctcgcgctgtacTCCATCACCATAGTAACCACTCTGGGAGAGTACTGTATGTTACTGTTCCATCCATTCTGAATGTCTTAACCGTTTGCCTGTATTATAATTTACGCTTATTGTTCTGAATAAAGAGACAAACTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249549 lncRNA upstream 15018 6516868 ~ 6545971 (+) True G218862
TU249531 lncRNA upstream 50938 6509194 ~ 6510051 (+) True LOC110507908
TU249523 lncRNA upstream 105787 6450338 ~ 6455202 (+) False G218842
TU249514 lncRNA upstream 121343 6434447 ~ 6439646 (+) True G218839
TU249458 lncRNA upstream 153903 6344845 ~ 6407086 (+) True G218805
TU249680 lncRNA downstream 93839 6700848 ~ 6701347 (+) True G218966
TU249700 lncRNA downstream 128011 6735020 ~ 6735498 (+) True G218986
TU249611 lncRNA downstream 165330 6772339 ~ 6773043 (+) True LOC110507743
TU249612 lncRNA downstream 166872 6773881 ~ 6777798 (+) True LOC110507774
TU249734 lncRNA downstream 190865 6797874 ~ 6801798 (+) True G219017
XM_036967157.1 mRNA upstream 33600 6513297 ~ 6527389 (+) True LOC110508080
XM_036967156.1 mRNA upstream 44934 6513292 ~ 6516055 (+) False LOC110508080
XM_036967150.1 mRNA upstream 50647 6499545 ~ 6510342 (+) False LOC110507908
XM_021588331.2 mRNA upstream 50647 6499557 ~ 6510342 (+) False LOC110507908
XM_036967143.1 mRNA upstream 50647 6499557 ~ 6510342 (+) False LOC110507908
XM_021588246.2 mRNA downstream 4090 6611099 ~ 6620958 (+) False nmt2
XM_036967160.1 mRNA downstream 4404 6611413 ~ 6620958 (+) False nmt2
XM_021588254.2 mRNA downstream 4517 6611526 ~ 6620958 (+) True nmt2
XM_021588216.2 mRNA downstream 17566 6624575 ~ 6631601 (+) False LOC110507851
XR_002471192.2 mRNA downstream 25105 6632114 ~ 6635038 (+) True LOC118936368
TU249525 other upstream 105787 6450338 ~ 6455202 (+) True G218842
TU249359 other upstream 298632 6259937 ~ 6262357 (+) True LOC110534143
TU249353 other upstream 307398 6252557 ~ 6253591 (+) False LOC110535707
TU249354 other upstream 307398 6252557 ~ 6253591 (+) True LOC110535707
TU249358 other upstream 308506 6250996 ~ 6252483 (+) False LOC110535707
TU249650 other downstream 17575 6624584 ~ 6631601 (+) True LOC110507851
TU249685 other downstream 110619 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 187551 6794560 ~ 6807670 (+) True LOC110507732
TU251120 other downstream 331591 6938600 ~ 6944979 (+) True LOC110520781
TU251106 other downstream 372122 6979131 ~ 6986522 (+) False LOC110508323

Expression Profile