RNA id: XM_021588246.2


Basic Information

Item Value
RNA id XM_021588246.2
length 2540
RNA type mRNA
GC content 0.46
exon number 12
gene id nmt2
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6611099 ~ 6620958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAGATGGCGCTATTTCCGACTAACCTCTTTGTTTTTcccatccctccctgtctcctgttcATTCAGcatatttaaaaatataaatatatatgttttcaTCCATGATGGCGGAAGATAGCGAGTCCGCAGCCAGTCAGCAGAGCCTGGAGCTGGACGACCAGGACACCTGCGGAATAGATGGCGATAACGAGGAGGAGAATGAACACATGCAAGGgagcCCGGGGGGAGACTTGGGGgctaagaagaagaagaagaaacagaagagaaagaaagagaagccGAGCTCTGGAGGGGCCAAGTCAGACTCTGCCTCAGACTCACAGGAGATAAAGAACCCAGGGCTGCCCATGCAGAAGCTGCAGGACATCCAGAGAGCCATGGAGTTGCTGTCCTGCCAGGGACCAGCTAAGAGCATCGACGAGGCCACCAAACACAAGTACCAGTTCTGGGACACACAGCCAGTACCTAAACTCAATGAGGTTGTAACCAGCCATGGGCCCATGGAGGCTGACAAGGACAACATCAGACAGGAGCCCTACTCTCTACCACAGGGCTTTATGTGGGACACGCTGGACCTCAGCAACGCTGACGTGctgaaGGAGTTGTACACCTTGTTGAATGAGAACTATGTGGAGGatgatgacaacatgtttagattTGATTACTCACCCAGCTTTCTCAAATGggcgtTGCGTCCTCCAGGCTGGTTGCCCCAGTGGCATTGTGGGGTGAGGGTTTCCTCCAATAAGAAACTGGTTGGTTTCATCAGTGCCATTCCTGCTGATATCCACATCTACGACACcttaAAGAAAATGGTTGAGATCAACTTCCTGTGTGTTCATAAGAAATTGCGTTCAAAGCGTGTGGCTCCAGTTCTGATCAGGGAGATCACACGAAGGGTTAACTTGGAGGGTATATTCCAGGCCGTCTACACGGCAGGAGTGGTACTACCCAAACCTGTGTCTACCTGCAGGTACTGGCATCGTTCTCTGAACCCCAGGAAGCTGGTGGAGGTGAAATTCTCTCACCTGAGCAGAAACATGACGCTGCAGAGAACCATGAAACTGTACAGACTACCAGACAGCACTAAGACCCCGAGCTTGCGAGCGATGGAGAGGCGTGACGTGCGTCAGGTGACAGAGCTGCTGCAGAAACATATGAGACGTTTCCAGCTGGCGCCCTCTATGGGCGAGGAGGAGGTGGCACACTGGTTCCTCCCTCAGGACAACATCATAGACACATTTGTCGTAGAGGGTGCTGGTGGTGTGTTGACAGACTTCACTAGTTTCTACACCCTGCCCTCCACAGTGATGCACCATCCACAGCACAGAAGTCTAAAGGCTGCTTACTCCTTCTacagcgttcacacacacactccactacTGGACCTGATGAATGACACTCTCATACTGGCCAAACTGAAAGGCTTTGATGTGTTTAATGCTCTGGACCTGATGGAGAACAAGGTGTTTCTGGAGAAGCTCAAATTTGGCATCGGAGACGGCAACCTGCAGTATTACCTCTTTAACTGGAAATGTCCCCCCATGGACCctgacatgGTTGGCCTTGTTCTTCAATAACTAGTCTGTCTGTGACTGCTACACACTCAGAGGTCAAAGGTCTTCTTTGACCCCTAACATCGCTCTACCTGGACACACAGGTAGTCCCAAACTAGAAGAAGACAATGAcaacaatcaaccaatcaaagtGATCGGGAGGTGTGCATCACTTTGAGCATCTCTCCTGGATCATTTTTTATCATGGAGAACATTCTCTCTGCTCACCCGGAACTGATAACTCTTTTTAACCATCAACATCCTGAATGTGAAGTCATGCTCTGCCTGAGACAGACTcttgtacagtacacacacacacacacacacacacacacacacactacacgaaGAGAAGGAAGACTTGCATCcataatgtttttgttgttttattcaAAAAGGTGCATTGGTAACCGTGTTTGTTGGACAGTGCAGAAATGTAGTAACCTGTGCATTTAATGCCAGAACACATTTATTCCTGTAGTGTGGAATATGGGGGGTGGGAGAGGAAAGATTCAACTAGCGTAGATGTTATTGACTTTGGTGTTCCTATGAACGGTTAAGAGGGGAGGGGATTCTAGGGATTTTTGAGGAAGAATGTATTTGAAGCACAAATCTTAAGTTCTTAACTGAGTGAAAGGCTCCTTAACAACCCCAGGTGCATTTTATATATCGattatttctgttttgtgtgtttagGTTTTTTAATATCTGAGTGTTTGAGAAACATAAAATGCAGGATGGgaattttattattttaaaattgtttttatttattttttgtgtttGTGCAGCTAACAGCATATTATTTTAAAAAGGTCGCAATTTTTTTCCCCGGGCACAATTCTGATATTTAGGATTGTGCTTATATGTTGTGTGTTCTGTCACCATTCCTCCCATGTCTGTCACTATTTGTTAAAACACCTTAAAAATCAAACCGGCATCTTCACCTATAAATAAAGGTTTTGGGTAGGAGTATCAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249591 lncRNA upstream 1615 6556777 ~ 6609484 (+) True G218892
TU249641 lncRNA upstream 11952 6598227 ~ 6599147 (+) True G218929
TU249549 lncRNA upstream 65128 6516868 ~ 6545971 (+) True G218862
TU249531 lncRNA upstream 101048 6509194 ~ 6510051 (+) True LOC110507908
TU249523 lncRNA upstream 155897 6450338 ~ 6455202 (+) False G218842
TU249680 lncRNA downstream 79890 6700848 ~ 6701347 (+) True G218966
TU249700 lncRNA downstream 114062 6735020 ~ 6735498 (+) True G218986
TU249611 lncRNA downstream 151381 6772339 ~ 6773043 (+) True LOC110507743
TU249612 lncRNA downstream 152923 6773881 ~ 6777798 (+) True LOC110507774
TU249734 lncRNA downstream 176916 6797874 ~ 6801798 (+) True G219017
XM_036967159.1 mRNA upstream 4090 6560989 ~ 6607009 (+) False LOC110520771
XM_036967158.1 mRNA upstream 4090 6560990 ~ 6607009 (+) False LOC110520771
XM_036967157.1 mRNA upstream 83710 6513297 ~ 6527389 (+) True LOC110508080
XM_036967156.1 mRNA upstream 95044 6513292 ~ 6516055 (+) False LOC110508080
XM_036967150.1 mRNA upstream 100757 6499545 ~ 6510342 (+) False LOC110507908
XM_021588216.2 mRNA downstream 3617 6624575 ~ 6631601 (+) False LOC110507851
XR_002471192.2 mRNA downstream 11156 6632114 ~ 6635038 (+) True LOC118936368
XM_021588084.2 mRNA downstream 21545 6642503 ~ 6654110 (+) False LOC110507805
XM_021588102.2 mRNA downstream 21545 6642503 ~ 6654110 (+) True LOC110507805
XM_036967163.1 mRNA downstream 38766 6659724 ~ 6712667 (+) False LOC110507826
TU249596 other upstream 4090 6605322 ~ 6607009 (+) True LOC110520771
TU249525 other upstream 155897 6450338 ~ 6455202 (+) True G218842
TU249359 other upstream 348742 6259937 ~ 6262357 (+) True LOC110534143
TU249353 other upstream 357508 6252557 ~ 6253591 (+) False LOC110535707
TU249354 other upstream 357508 6252557 ~ 6253591 (+) True LOC110535707
TU249650 other downstream 3626 6624584 ~ 6631601 (+) True LOC110507851
TU249685 other downstream 96670 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 173602 6794560 ~ 6807670 (+) True LOC110507732
TU251120 other downstream 317642 6938600 ~ 6944979 (+) True LOC110520781
TU251106 other downstream 358173 6979131 ~ 6986522 (+) False LOC110508323

Expression Profile