RNA id: XR_002471192.2


Basic Information

Item Value
RNA id XR_002471192.2
length 2115
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC118936368
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6632114 ~ 6635038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACGGTATGGAAATTCCATTCCTCCATTATCTCTGTTGTAGCTTGCTGGTATGCAATGAAATGGCGCTTCCTACTGAAGTTTAGTTAGCTAGCTTTAagccatagaaaatatttgggcTATGTTATATCAATTGACATGTGTTTTCTACTTCTTTATTATGTATGTAAGGGTTTTAAAACCGACACTGTTGATTGGCCAGACAGCAACGGTACCACTGAAGAACGTTAGCAAGTGAGTGAAGTGTCAGTGGGCCTGCCGCGTGAATACAAAGACGTAGACAACAGTTGTTCCCTGAGGATGGAGAGGAACGGGTCTGTGAAGCAGGAGACTATAAGTGTTGCCTCCTACAGTTAGGAAGAGAAGAAGCTGTTGGCTGCCATGGTGTCTGAGAAGGGGGAACTGGAGCTGACTGGCTCTCTGGTGATGGAGGTGACTGAGGTTCTACAGTAAAGTGATGCAGACACTGCACCCAACAGGGAGGAAAGGGCTCTGTAcctagaggaggagaaaggagatgagagacagacagatgaaggGACTGCCcagcagagaggagcagcagGCTAATGCTGAGTGTGAACCCTCAGTGGAGCCTGAGGTATATTTAGATTCTGTGAGCGACGGCGTGCGAGATACGGAGCGAGCGAGCCATCCTACACTCCACGCCGACACAAGAAGCTGTGTGTGTGATGGCCAGCCTGAGGAGCCTGTTGGGTTTGACAAACTCTGCATGCGGTTCCACGACCTCAACAGTTATGAGGAGCACGTCCCTCGAGAGCACTCCAAACGCTCACGGCCTCTCTGTCCAGACTGTGGCATCCTCATCTCAACGTTACTCAGTGTGGAGCACCAGTGTGAACAAGTTCAAGCTGTTCTGTCTGTGGGAAGCGCTGCGTGGATGAAGCTGGCCTCAAGCATCACCAGAGGCTTCACCATCAAGAGCATGTCTACTCCTGTAAGTTCTGCCTCAAGCACTTCAAGGCCAGGGAAGACAAGCGGACCCACGAGAAGGACAACCACCGGGTCAAATGCCCCTGGGGATTTTACAACATCTTGAAACGGAACCGCCATCTCAGAGAGCATGAGTCCAAGACATTTGTAACACGTGCTACAAGGAATTCCCCCAACTTAGCAAGCTTGAGAGGTACGAGCTGAGCCACAGTGACAACAAATCTTTCAGGTGTCAGGTGTGCCAGCGTTCTTTGCCCAGGCCAGCCAGCTGAAGTCCCACCTGCGCGTCCACACTGGGGAGAGGCCCTTCAAATGCCAGCGCTGCGTCAAGAGCTTTAACCACAATGTCAGCCTCAAGAACCTCTTCACACGCTATCAccaaggggagggagggagggagggaggtgcgAGAGCGGAGGAGCAGGCGACAGTGGAATTATGAACCTGAGGAGGAGGAGCGTCAGAATGAGAGTGATTCTGACTTTgacctggaggaagaggagaagacagggagtAAAGGGAAAGGTAGTGGAGGAGGGGGGCACTGGTAGAAGCCTCTAGGAGAGATACATGTGGACACTGCTGTTGAAAAGCTGGATACATTATCATCACCACCCCAGagagaaccagaccagaaccaggaGGCACCTGACGGTGTTATTAAAAAAAGTCTTATCGGTTTTGTCATGACCATAATGTTTTGGCTTTGAACATTACTTAGAACTCTTGAGGCTGTTGTTTTTTCACTTCTACAgttttggtttaaaaaaaaaaagatatatatatatatatatatattgttaatgAAAATGTGTTTCACTGTTCTACATCATCAAATGTCAAGGAAAAATCTGATAGGTTTGTGAAGTGAATATGTTACAAAGAATTTCCTACCCACAGATGTTATTGACTGATATATTGCATTTTGAATTCTCCTGGCTGGACCGGCCCACTAGTTAAGAAGCACAGAGATAAACTCATCTTGGATATAACCAGCGAGGAAGCAAGAGGCTTGATTCTGCTCTAAAGTATGTCAGTACAAAAATAGTGTTAACCAGTGGGAGTGGGGATTTTCTTTTAGGGAGGTCAATGAGATAATGTTGAATTTGGTcaacagttaaataaaggttacataaaaataaacataaaattGAATTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249591 lncRNA upstream 22630 6556777 ~ 6609484 (+) True G218892
TU249641 lncRNA upstream 32967 6598227 ~ 6599147 (+) True G218929
TU249549 lncRNA upstream 86143 6516868 ~ 6545971 (+) True G218862
TU249531 lncRNA upstream 122063 6509194 ~ 6510051 (+) True LOC110507908
TU249523 lncRNA upstream 176912 6450338 ~ 6455202 (+) False G218842
TU249680 lncRNA downstream 65810 6700848 ~ 6701347 (+) True G218966
TU249700 lncRNA downstream 99982 6735020 ~ 6735498 (+) True G218986
TU249611 lncRNA downstream 137301 6772339 ~ 6773043 (+) True LOC110507743
TU249612 lncRNA downstream 138843 6773881 ~ 6777798 (+) True LOC110507774
TU249734 lncRNA downstream 162836 6797874 ~ 6801798 (+) True G219017
XM_021588216.2 mRNA upstream 513 6624575 ~ 6631601 (+) False LOC110507851
XM_021588246.2 mRNA upstream 11156 6611099 ~ 6620958 (+) False nmt2
XM_036967160.1 mRNA upstream 11156 6611413 ~ 6620958 (+) False nmt2
XM_021588254.2 mRNA upstream 11156 6611526 ~ 6620958 (+) True nmt2
XM_036967159.1 mRNA upstream 25105 6560989 ~ 6607009 (+) False LOC110520771
XM_021588084.2 mRNA downstream 7465 6642503 ~ 6654110 (+) False LOC110507805
XM_021588102.2 mRNA downstream 7465 6642503 ~ 6654110 (+) True LOC110507805
XM_036967163.1 mRNA downstream 24686 6659724 ~ 6712667 (+) False LOC110507826
XM_036967164.1 mRNA downstream 24686 6659724 ~ 6712667 (+) False LOC110507826
XM_021588121.2 mRNA downstream 24688 6659726 ~ 6672582 (+) False LOC110507826
TU249650 other upstream 513 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 25105 6605322 ~ 6607009 (+) True LOC110520771
TU249525 other upstream 176912 6450338 ~ 6455202 (+) True G218842
TU249359 other upstream 369757 6259937 ~ 6262357 (+) True LOC110534143
TU249353 other upstream 378523 6252557 ~ 6253591 (+) False LOC110535707
TU249685 other downstream 82590 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 159522 6794560 ~ 6807670 (+) True LOC110507732
TU251120 other downstream 303562 6938600 ~ 6944979 (+) True LOC110520781
TU251106 other downstream 344093 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other downstream 344454 6979492 ~ 6986522 (+) False LOC110508323

Expression Profile