RNA id: XM_021588084.2


Basic Information

Item Value
RNA id XM_021588084.2
length 4429
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110507805
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6642503 ~ 6654110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCCGTGGTGGAAACAATGGTGGAATGCAGAGATTTGTAAGGAAAGCCAACCTTACACCCGTCCCTAATACATTCgatttagttttaaatagtatCTATATTCCGCCCAATCATGGCCAATAATAATATAATCTTTACACCCTTTTTACCACTGAAGAAGAAACCCGATCGAGATTCTGAGTGGAGAAAATTAAAGGACAAATCCAGAAATCGGATTAATATCGGAGAAGCTTTTACCAGATGGAGGAACCTCAAGGAGGGGAAATCTATGCCTACAGATGCCGAagtggctttgtttttgcttgACAGGTTAGCTGCCCCCCTTCCACAACCTgctgccccccctccctccccagaagATATAATCGTGAACATCGACTGCCTGCTGCAGCTGTTTCAGCGGTGTGAGCAGTGCAGGCGTGAGAGTGTGATCCAGACGCAGGGAGACAGGACATGCCTCTCTGTGACCCAACACTGCCAGAGCTGCAACCACCGCAGGACATGGGCAAGCAACGCATCTACTGTCCAGACAATGCTCAAAGGAAATGGGGACGAGCCACAGAATATTCAGGTTGATATGCAGGTGGCCCTGCCATCTGAGGACACAGATGGAGCCTCGCCGTCTGAGAACCGAGATGGGGACTTGCCATCGGAGGACAGAGATGAGGCTCTGGATCTGACTGGCTCTTTGGAGATGGAGGTGACTGTAGACCAGCCACCAAGACCAGGAGGAAGTGGCATGTCCCTGGTGAGGGGGAAAAATGAGGGGAAcaaaggaacagaggagagaaagaaagtgacTAAGGTGGTGTTGGACAGTGAGATGGACTGTGCACGAAGCCAGGAGGACAATGGCCTGTCCTCACAGGAggatgaggaaggagaggagagaaagggaaagttCCTAGGTGGTGAACAACAGGAGAATGGTGCTGAGCAGCGGGCCTCTATTGAGGTGACAATATACTCTATAGAGCCTGAGGACTCTGAAAGCCCAACCTCTcagatagacagaggagagaagacgGAGGTCGCTGCAGATGGGTGTGAGGGGGAGGGTGATGTGTGTGAGATGGAGGGTGAAGAGACAGATGaggaagatagacagacagagagtggctCTGAATTTGACCCAGAAACTGAggaagagagactgggagagagtgACTCTGAATTTGACCCAGAAGAGGAGAAACCAACGAgtagtagagggagagggagagggagaggcaggggaaggggaaggggaagggggaaagggagatGCAGAGGAAGGCAATTGCAGCAgcctacaggagggactggtttgGATGAGTCTGCTGAAGACTCTGATGGATCACCTTCATCATCACCCCAGAGAGACCAGCAGGACCAGGAGTCGTTCAGCGGTGCTGCTGGAGAACTGGGCTCCGGGGACCTTGTCAGCATCCGGCAGAAATTCAAATACTCTAAAAAACACCACATGGTCCTCTGTCCTGAATGTGGCGTCCTGTACACCACCAGGCTGAAACACCATAAGTGTGAACACAAGTTCATGGTCCGCTGTCCAGACTGTGGGCAGGGTTGTGCGAGTGAACTGGGCCTCAAGCAGCACCGGAGGCTACACCGTCAGGACCTTAAGTTTCCCTGTAAGTTCTGCCTCCAATCCTTCAGGACACGGCCAGACAAGCTGACCCACGAGAAGACCCACAGATTCAAAAGATTAAAAGGTCACAGATGCTACAGCTGCTCAGAGTGCCCACTGAGCTTTGACAACATCCTCATACGGAATCGCCATCTCAGAGAGCACGAGTCCAAGAGACACATCTGTCACACATGTTACAAGGAATTCAACAAGGGTCACCTCCTGGAGAGGCACGCACTGTCCCACAGTGACGACAAGCCCTTCAAGTGCCAGGTGTGCCAGCGTGCCTTTGCCCAGCTCAGCCAGCTGAAGTCCCACCTGCGCGTCCACACTGGGGAGAGGCCCTTCCAATGCCAGCGCTGCGACAAGAGCTTCAACCACAACGTCAGCCTCAAGAACCACGTCAGACGCTACCACAGCCCAGACTCAGGGCTGGACCCTGATGGAGGCACAGAAGTTGGGGGACAGGGGGGGAGCAGGGAAACAGATGGCAGGACTgggcaggagggaggggaggtgaaaTCGAGGAAGCCTCGGCAGCAGGTAGAGCTTACCTTTATGACTGAGTGGGAGATGTGGGCAGGAGGACAGGGAGcaaagagagtggaggagaaacCGAGGAAGAGGAAACGCCAGTGCAATGATGatcctgaagaggaggaggaggagaggcagcgagagagtgACTCTGACTTTGACCCAGTGGCGGAGAAGAAGATGGGGAGTAGTAAAGGGAGGGggccagggagaggaggggggagaggaagtgGAGGGAGTCACTAGCAGAGGCCTACAGGAGAGACTTCTGCAGGCACTGTTGTTGGAGAGatggggggacagagagacaaaggctgtattcattagtgcacactgtaccaaaacattttgtaACCGAAAATGAAAACAAGCGtttgttattggacaagttcaggtactGCCTCGCCGTTTTGGCCCGTTTGCTTCTGATTTGTTCTTAGTGAATATGACTTTTAAAAAatggaacctttatttaactaggcaagtcagtcaagaacaaattcttatttacaatgacggcttaccccagccaaaccctaacgacactgtgggactcccaatcatggccggttgtgatacagcctggaatcgaaccagggtctgtagtgacacctctagcactgagatgcagtgccttagaccgctgcttcACTCGGGAGTCCCAAGACTAAGAGCAGGAAACATCTCCTGGCACTAGAATTTGTTATCCTCATGTTCTGTCTTTGAATTTAGAACATTTTTGGATTCCCAGAACCtgattgaagaatctaaaatatatttagatttgttaaactattcttttggttactacatgattccatatgtgttatttaatagttttgatgtctacactattctacaatgtagaaaatagtgcaaataaagaaaaacccttgaattagtagttGTGTCCCAACTTTTGAGTGGTAGTGTACAGTATCAgccagaagtttggacacacctacacagttATGGTTCAACACATTGCACATGAAATGTGTAACGTTGCCCTAAACTGCCGTTTCTGTACTCTATATGGTGTCATGATCACCACTGATCACACCTAGTTTGTGTGATGTTTCATATACGCTAATGGCAGGTAATGCACCAGGATCTAGTTTTGAATGCACCAGTATCAGATTTTTCAACCCAGGTACTAGCAACATATGGGCCTCGGAAATACTGCACCCCAGCTTAACACTTTGATCATTATTAAATATCATATTCCATTAATGTAaagctaaaaatatatataagagAAGTCTCAGTCGGAGTTAGATAACCATGGAAGAATGAATAAGCAAAGTCGTGTGAAGTGTAAGAAGATCACCATTTAACACATTCACAGTGTCTTTTCCGGGCCTTGGCAGTCAGATTACTGGGGAAATGTCATGAGCAGTGCTACATACACCATGataggctgaccacaccgctcgcgagcgttgcaaaatacatttagaaatctctGTTATagaattattgcacccacactgctcgcagtcgtcaacgagcatctgcgttgccaagggctaaaatagaagtcattcctatttctgacgcagatcgcgctgcaagtcctgcctctcccatctcctcattggtttatagaagcaggtacgcACGTGCCATcttctcattggttatacccacgtaggtgattgaaagacgaactgttgccggttgtcgtggtaatactatgaaagtttagatgccaatcaccatgtAAGTTAAACgatgaaaaggcctggaaggaggagagatgactagaaacgattcggttgaccattTTTATGTGtagattaattgtcggagtagaggacctagtgcatttcaggtaaaagaacaacctaatgtttatatcccaggacaaattagctagcaactacaagctagctaaataggacaaattagctaataAGTgcaagctaaattgccataaatgttaaatgcttttcgacctgtccccaaattaatgtcataaattcagagtttgttttgatattttaaactGTGTGTCGTGATCGCTTTTGTTgcagggggacaaaataaatgtatgcacgatggcgcacgtgaAATACTAAGGTGAGTTTGCGGGATTAAGCCGCGCTTCGATTGGACTGCAAACTGAATCTGATTTATAGTGCCTTAAGAAAATATTtgtaccccttgatttattccacattttgttgttgcagactgaattcacccatctacacactaccccctaatgacaaagtgaaaatgtttAATAaaccatttacataag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249591 lncRNA upstream 33019 6556777 ~ 6609484 (+) True G218892
TU249641 lncRNA upstream 43356 6598227 ~ 6599147 (+) True G218929
TU249549 lncRNA upstream 96532 6516868 ~ 6545971 (+) True G218862
TU249531 lncRNA upstream 132452 6509194 ~ 6510051 (+) True LOC110507908
TU249523 lncRNA upstream 187301 6450338 ~ 6455202 (+) False G218842
TU249680 lncRNA downstream 46738 6700848 ~ 6701347 (+) True G218966
TU249700 lncRNA downstream 80910 6735020 ~ 6735498 (+) True G218986
TU249611 lncRNA downstream 118229 6772339 ~ 6773043 (+) True LOC110507743
TU249612 lncRNA downstream 119771 6773881 ~ 6777798 (+) True LOC110507774
TU249734 lncRNA downstream 143764 6797874 ~ 6801798 (+) True G219017
XR_002471192.2 mRNA upstream 7465 6632114 ~ 6635038 (+) True LOC118936368
XM_021588216.2 mRNA upstream 10902 6624575 ~ 6631601 (+) False LOC110507851
XM_021588246.2 mRNA upstream 21545 6611099 ~ 6620958 (+) False nmt2
XM_036967160.1 mRNA upstream 21545 6611413 ~ 6620958 (+) False nmt2
XM_021588254.2 mRNA upstream 21545 6611526 ~ 6620958 (+) True nmt2
XM_036967163.1 mRNA downstream 5614 6659724 ~ 6712667 (+) False LOC110507826
XM_036967164.1 mRNA downstream 5614 6659724 ~ 6712667 (+) False LOC110507826
XM_021588121.2 mRNA downstream 5616 6659726 ~ 6672582 (+) False LOC110507826
XM_021588129.2 mRNA downstream 5616 6659726 ~ 6672582 (+) False LOC110507826
XM_036967162.1 mRNA downstream 39738 6693848 ~ 6712667 (+) False LOC110507826
TU249650 other upstream 10902 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 35494 6605322 ~ 6607009 (+) True LOC110520771
TU249525 other upstream 187301 6450338 ~ 6455202 (+) True G218842
TU249359 other upstream 380146 6259937 ~ 6262357 (+) True LOC110534143
TU249354 other upstream 388912 6252557 ~ 6253591 (+) True LOC110535707
TU249685 other downstream 63518 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 140450 6794560 ~ 6807670 (+) True LOC110507732
TU251120 other downstream 284490 6938600 ~ 6944979 (+) True LOC110520781
TU251106 other downstream 325021 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other downstream 325382 6979492 ~ 6986522 (+) False LOC110508323

Expression Profile