RNA id: XM_021588207.2



Basic Information


Item Value
RNA id XM_021588207.2
length 270
RNA type mRNA
GC content 0.55
exon number 2
gene id LOC110507843
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6656513 ~ 6656888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGTCAACCAGGTGTCAGAGTACCCTGCTGAGCAAACGTTCCAGTACCAGCATAGCCTGCCTCCTCTCCCTGTACCGTCTCTAGAGGGGAGCGTCGCCAAGTACCTGGATGCAGTGCGGCCGTTTGTTACAGAGGAGGAGTACCAGGTGACTGCAGCCGTAGTGAAGAGGTTTGGAGAGGGCATCGACAAAGACCTGCACCAAAAACTACTGCAGAGagccaggacacacaggaactgggtacacacactcaacacactgCACAGCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU250944 lncRNA downstream 14358 6638940 ~ 6642155 (-) True G219988
TU250920 lncRNA downstream 49505 6603182 ~ 6607008 (-) True G219970
TU250792 lncRNA downstream 158553 6496695 ~ 6497960 (-) True cf191
TU250752 lncRNA downstream 249445 6344657 ~ 6407068 (-) False G219822
TU250955 lncRNA upstream 2857 6659745 ~ 6660111 (-) True G219999
TU250881 lncRNA upstream 55292 6712180 ~ 6783455 (-) False G219933
TU250878 lncRNA upstream 55342 6712230 ~ 6783455 (-) True G219933
TU250900 lncRNA upstream 116474 6773362 ~ 6774340 (-) True G219952
TU251014 lncRNA upstream 158798 6815686 ~ 6815896 (-) True G220056
XM_021588265.2 mRNA downstream 32546 6622171 ~ 6623967 (-) True LOC110507876
XM_036967161.1 mRNA downstream 32596 6622171 ~ 6623917 (-) False LOC110507876
XM_036975428.1 mRNA downstream 106115 6527175 ~ 6550398 (-) True LOC110508127
NM_001160659.1 mRNA downstream 156933 6496696 ~ 6499580 (-) False cf191
XM_021581728.2 mRNA downstream 157666 6496695 ~ 6498847 (-) False cf191
XM_036967171.1 mRNA upstream 57355 6714243 ~ 6743701 (-) False LOC110507788
XM_036967168.1 mRNA upstream 57355 6714243 ~ 6744634 (-) False LOC110507788
XM_036967169.1 mRNA upstream 57355 6714243 ~ 6744634 (-) False LOC110507788
XM_036967170.1 mRNA upstream 57355 6714243 ~ 6744634 (-) False LOC110507788
XM_036967167.1 mRNA upstream 57355 6714243 ~ 6744673 (-) True LOC110507788
TU250797 other downstream 165498 6486500 ~ 6491015 (-) True LOC110507902
TU250699 other downstream 314900 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other downstream 317700 6332968 ~ 6338813 (-) True G219820
TU250494 other downstream 904419 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 907799 5748158 ~ 5748714 (-) True G219591
TU251084 other upstream 273103 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 273103 6929991 ~ 6932356 (-) False LOC110508304
TU251088 other upstream 273103 6929991 ~ 6931881 (-) False LOC110508304
TU251092 other upstream 273103 6929991 ~ 6932356 (-) True LOC110508304
TU251203 other upstream 291910 6948798 ~ 6950956 (-) True LOC118964351

Expression Profile