RNA id: XM_036967163.1


Basic Information

Item Value
RNA id XM_036967163.1
length 3999
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC110507826
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6659724 ~ 6712667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTTCTCTCTTCCGGGTGTTGGCAGTCCGTTAACTGGGGTTGActagatgggatacagcttttgtcagatttgacttttcgtagcaggctAGGATAATTCGTTTAATATTAGGAAAAAGGTCCGAGTTAGCTAAAATGCCCAAATAAACACACGTTTGgcgttaatttgacaaaagttGTAGCCCTTCTAGCCTTGACCTCTTACTGGGTGAAAGGTGATGAGAAGCGCTGCATACCCCACGAGCGGAGCAACAACACAAACTACCGCAAGCGCTTTCCTCTACAGTCTAGTTTAGAAAATAGCTGCAACATCATTTTTATTTTGAATGGACGAACGAAGACAACTTTCCACATATCGGAATTTGCAGAATATCGCAAAATACTACGGTAACATGACCAACCAGTTGTCAGAGTTCCCCACTGAGCGGACGTTCCAGTACCAGCATAGCCTGCCTCCTCTCCCTGTACCGTCTCTAGAGGGGAGCCTCGCCAAGTACCTGGTTGCAGTGCGGCCGTTTGCTACAGAGGAGGAGTACCAGGTGACTGCAGCCGTAGTGAAGAGGTTTGGAGAGGGCACCGGCAAAGACCTGCACCAAAAACTACTGCAGAGAGCCAGGACACGCAGGAACTGGTTGGAGGAGTGGTGGTTGAATTCAGCCTATCTGGAAATGCGTTACCCCTCCCAGTTGAATGTGAACTTCGGAGGTCCTGCACCCTACCTAGAGcactgctggccccctacagagGGAGtacagctacagaggaccagcATAAGCATGTGGCACACTCTACAGTACTGGGACCTGCTTCGCACGGAGAGGCTGGACCCACACAAAGCTGGTAATGTGGTGTTGGATATGGACCAGTTCAGAATGCTGTTCTGTACATGTAAAGTTCCTGGAGTCACCAAGGATACCATCATCAACTACTTTAAGACGGAGAGCGAGGGTCCATGCCCCTCCCATGTGGTGGTGATGTGTAAGGGGCGTTTCTTCTCGTTTGATGCAGTGTGTGACGGACACATTCTTACCCCTCCAGAGCTGCTCAGgcaGCTGACCCATGTGAAGCAGTGTTGTGAAGGGGAGCCAGCGGGAGATGGTGTCGCCGCTCTCACCTCAGAGGAGAGGACACGCTGGGCTAAGgCCAGGGAGTATCTGATAGGTATAGATCCAGCCAATAAGACCATCTTAGAGACCATCCAGAGCAGTCTGTTTGTGGTCTCACTGGACGATGCTAAACCCTACGCTACTGCAGAGAACTACACAccaGTGACCCGGGAAGCGCTGACAGGAGACCCCACCATCCGCTGGGGTGACAAGTCCTACAACTCCCTCTCCTTCGCCGACGGAACCTTCGGATCCAACTGTGACGTGTGTGCtttttttactCATGCCCCCTACGATGCCATGGTGCTGGTAACTCAGGGTTACTATGTGGATCAGCAGCTCAAAGCTACAGACGGCAGGTGGAAGGGCTCTGAGACGGTGCAGCCTATGCCTCTTCCTGAAGAGTTGGTCTTCACTGTGGATGACAGAGTCAGGAGGGACGTTGCACATGCCAAGCAACAGTACTTCGAGactactCAGGACTTGCAGGTGGTGTGTTATGCGTTCACCTCGTTTGGGAAAGCAGCCATCAAACAGAGGAAGCTCCACCCAGACACCTTCATACAACTGGCCCTTCAACTGGCTTATTACAGACAGCATGGGAGGTTAGGTAGTTGCTATGAGACAGCGATGACCAGAAGGTTCTACCATGGCAGGACTGAGACCATGAGGCCCTGTACCCTGGAGGCACAGAACTGGTGCCATACCATGCTCCTCCCTGCAGCCAGCGCTGAGGCTAAGAGGAAAGCCTTGCTGCTGGCCTTCAACAAGCACAACAAACTGATGGCTGAGGCACAGAACGGAAAAGGTTTTGACAGACATCTCCTGGGCCTTTACCTGATCGCCAAGGAGGAGGGACTTCCTATGCCAAACCTTTTCACTGATCCACTGTATTCcaagagtGGCGGGGGCGGTAACTTTACCCTGTCCACCAGTCTGGTTGGCTACACCACAGTCCTGGGAGCGGTTGCTCCCATGGTGCACCATGGCTACGGGTTCTTCTACCGCATCGGAGACGACAGGATCGTGGCTTCTTGTACGGCGTGGAAGTCCAGTCCAGAGACGGATGCAGAGGCACTGTTCCAGAACCTGGTTTCCTCCCTACATGACATGTTACATCTCGCTACCACAGCtcagctctaacacacacacacacacacacacacacacacacacacagagtttgtAGATGGTAGTCAATAATAGTTTAGTTCTGCACAGATCAATGCAAAGgcacatttatttttttctacatttaaTAAAGAAAAATATATTATTTGTTTAAATGCAGCTCAACAAATGAGTTTATTTTGCACTTAGTGAATCATTCTCTGTGATTTTATGTAGCAGCTAGATCGGGGATTCCCTGTTTTCAAAATGTATAGATTGAATTTCCTACCACGATTCTGTTTAGATTTCGTCTGTTTTTATGTTATGAGAAACATTTAGTGTTAACCCATGCCATGCACTGCACACCGCTAAGCTAACATACACATCCTAACTCGCTGTCACCATAACACTTCCACTCTGCAGTGACCAGCGTAGCATCGCGTCGCCTGTCCCTGGTCATTAGTGATTCATGAATAGTATTATTTTTCTACATTGATTGGCTTTTCCAGAAGAGTGACTGAGGCATAGATGTTCTTGGTTGGTTGAAATGACTCTTTTAGAACGTAACTGTCGTTGTAGCTGTGAaattgagaaacagagagaaacggGTCATGTTGTCTTTGACTACCGTCTCACCTCAGGCCTCATGGGTATTATATAAGGGCCCTACTCAATCAAAACTGTTTTCCAGTTTCCAGGGCAAGAAAAATTGTTTTTATGTTTTGCACATCAGTAGAGGATTATGCATTTGGCTGGATATGATCAATGAAACAGTGTTTGGGTGAGACGGAAAGAAAGTCAATTATAATGTGCCTTTTTGCTGTGTCCTTATTTTAGTCTGTCCCCAGAGATCTGGTTAGTGGTTTTGATTGAATAGCTCCCTAATTGACCGAACTTTTTAGACTTCAATAGCTCTACCACTCCTATGCCAGATCCATAGGCTGCCGCCCTATGCAATATGCCATTTTATGTAGTAGATGTCTGTAATAATGAACATTCctgtcacaatttacccatgatacatcACGGTTTTGATGCTCTCGAACACAGCATTGTGTTAATACCGCTCAGACAGTCTTGAGATTTTcagcatgtttttttgttgtaaatgATAGAAAAGTGATAAAAGACGAGCGCTGCATTTGATTCAGTCAACAGAATGAAAAGAAGCTGTTTTAATGCCTAAAGTAGTGAAAATGATGTAACCCACTTTACAGTAGGAAAATTATAGTATTGACTTGGCTGACAATGTAAACttggaaaatgttttattgaatATGAAAGTTGTTTAGTGTGATTGAACTGACAAATCAAAGTGATTGAATCATGTCATGAGCCCAAATATTCAAATAAAACATCTTTATTAATGATACCTGTTTACATAAGGAAAAAAGtcatgcatacatacagtacatacccaaGCAGAGGTCAGTTAATTCAGTGCAACGTAGAAACAGGAACGTGGTTTGTATCAATATACTGTTAGTGCTTGAGCCCCAAccctcagctgtgtgtgtgtgtgtgtgtatatcactCAACATATTACCTTCAGTTAAGGTAAACAAAACATTCAGGAACTCTTTGGTCCTTTCAAATACCTCAGGCACTTCCAGTAGCATGAGCATAGCACAGAGACAGTTTGGAAGGCCACATCTCATGATCATTTAAAAAAGAATTCCTCTCAacattaaaggtccaatgcagctgttttttatcgcaatataaaatcatttctgggtaacaattaagtaccttactgtgattgttttcaattaaaattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249591 lncRNA upstream 50240 6556777 ~ 6609484 (+) True G218892
TU249641 lncRNA upstream 60577 6598227 ~ 6599147 (+) True G218929
TU249549 lncRNA upstream 113753 6516868 ~ 6545971 (+) True G218862
TU249531 lncRNA upstream 149673 6509194 ~ 6510051 (+) True LOC110507908
TU249523 lncRNA upstream 204522 6450338 ~ 6455202 (+) False G218842
TU249700 lncRNA downstream 22353 6735020 ~ 6735498 (+) True G218986
TU249611 lncRNA downstream 59672 6772339 ~ 6773043 (+) True LOC110507743
TU249612 lncRNA downstream 61214 6773881 ~ 6777798 (+) True LOC110507774
TU249734 lncRNA downstream 85207 6797874 ~ 6801798 (+) True G219017
TU249735 lncRNA downstream 85701 6798368 ~ 6801932 (+) True G219018
XM_021588084.2 mRNA upstream 5614 6642503 ~ 6654110 (+) False LOC110507805
XM_021588102.2 mRNA upstream 5614 6642503 ~ 6654110 (+) True LOC110507805
XR_002471192.2 mRNA upstream 24686 6632114 ~ 6635038 (+) True LOC118936368
XM_021588216.2 mRNA upstream 28123 6624575 ~ 6631601 (+) False LOC110507851
XM_021588246.2 mRNA upstream 38766 6611099 ~ 6620958 (+) False nmt2
XM_036967173.1 mRNA downstream 42172 6754839 ~ 6773064 (+) False LOC110507743
XM_021587964.2 mRNA downstream 42173 6754840 ~ 6773064 (+) False LOC110507743
XM_021587981.2 mRNA downstream 42173 6754840 ~ 6773064 (+) False LOC110507743
XM_036967175.1 mRNA downstream 42173 6754840 ~ 6773064 (+) False LOC110507743
XR_005040319.1 mRNA downstream 42173 6754840 ~ 6773064 (+) False LOC110507743
TU249650 other upstream 28123 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 52715 6605322 ~ 6607009 (+) True LOC110520771
TU249525 other upstream 204522 6450338 ~ 6455202 (+) True G218842
TU249359 other upstream 397367 6259937 ~ 6262357 (+) True LOC110534143
TU249354 other upstream 406133 6252557 ~ 6253591 (+) True LOC110535707
TU249685 other downstream 4961 6717628 ~ 6719163 (+) True G218971
TU249730 other downstream 81893 6794560 ~ 6807670 (+) True LOC110507732
TU251120 other downstream 225933 6938600 ~ 6944979 (+) True LOC110520781
TU251106 other downstream 266464 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other downstream 266825 6979492 ~ 6986522 (+) False LOC110508323

Expression Profile