RNA id: XM_036967171.1


Basic Information

Item Value
RNA id XM_036967171.1
length 3771
RNA type mRNA
GC content 0.53
exon number 25
gene id LOC110507788
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6714243 ~ 6744673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGATAAAGATGAagagaaaaagggggagaaaGAGCCAAAGATGCCGATGATTGGCGCCATAGCTCTGTTCAGGTTTGCTGATGGTTGGGACAGGTTGATGATTGTGCTGGGGACCATCATGGCTATGGTTAATGGAACGGTCCTCCCTCTCATGTGTATCGTCTTTGGGGACATGACTGACAGCTTCATAGGAGACTCCATACAGACACAGAATAATTTCACCACCATGCTATCTACTACTCTATAATGGGTGCGGTGGTGTTGGTAGCAGCCTACATGCAGGTGGCCTTCTGGACCCtggcggcaggcaggcaggtcaaACGCCTCAGGAAGCTCTTCTTCCACTGCATCATGCAGCAGGAGATCGGTTGGTTCGACGTCAACGAGACGGGAGAACTCAACACCCGCCTAACAGATGACATCTATAAGATCAACGAGGGAATAGGTGACAAGGTGGGCATGTTGATCCAGTCCTTCACCACCTTCATTGCTTCCTTCATCATCGGCTTCAGCAAAGGATGGAAGCTCACCCTTGTCATCCTGGCTGTCAGCCCTGTGCTGGGCTTCTCTGCTTTTATATTCAGCAAgGTACTGACGTCCTTCACATCCCTGGAGCAGAGTGCCTATGCTAAAGCTGGAGCCGTGGCTGAGGAGGTGATCTCTTCTGTCAGAACAGTCTTCGCTTTCGGTGGACAACAGAAGGagataaccagGTACGAGAAAAACCTGGAGGATGCTAAGAACATGGGGATCCGTAAAGCCATCTCTGCTAACATCGCCATGGGCTTCACCTTCCTGATGATCTATCTGTCCTACGCTCTGTCCTTCTGGTACGGCAGCACACTCATCCTATCTGGAGAATACACCATTGGAACTGTCCTCaccGTGTTCTTCACAGTGTTGATCGGGGCGTTTGCCATGGGACAGACTTCTCCTAATGTCCAGGCCTTCGCCAGTGCCCGGGGAGCGGCACACAAAGTCTACAACATCATCGACaatAAACCCCACATCAACAGCTACTCAGACCACGGCTACAAGCCTGATGTCATCAAAGGAAACATAGAGTTTAACAACATCCATTTCACCTACCCCTCACGGCCCAACGTCAAAGTGTTGAATGGAATGTCTCTGAGCGTGCGTAGTGGCCAGACCATAGCTCTGGTAGGCAGTAGTGGCTGTGGGAAGAGCACCACCGTTCAGCTGCTGCAGCGGTTCTATGATCCACAAGATGGATCAgTGTTTGTAGATGGTCATGACGTGCGCTCCCTGAACGTGCGCTTCCTGAGAGAGATGATTGGCGTTGTCAGTCAGGAGCCCATCCTGTTTGCTACCACCATCGCTGAGAACATCCGCTACGGACGACCTGACGTCACACATCAGGAGATAGAACAGGCTGCTAGGGAGGCCAACGCCTACGACTTCATCATGACACTACCTGATAAGTTTGAGACTCTAGTGGGAGACAGAGGAACccagatgagtggaggacagaaacAGAGGATCGCTATCGCACGCGCTCTCGTACGCAACCCCAAGATCCTCTTATTGGATGAGGCTACCTCAGCCCTCGACGCCGAGAGTGAGACCATCGTACAGGCTGCTTTGGACAagGTGAGACAGGGTCGTACTACCATCGTGGTGGCCCATCGTCTGTCTACTATCCGTAATGCTGATGTCATCGCAGGCTTCCAGAAGGGAGAGATCGTAGAGCTGGGAACACACAGCCAACTGATGGAAAAAGAAGGAGTCTACCACACACTGGTCACCatgcagACGTTTAAGAGTCCTGAGGAGGGCGAGGAGGCTGTGGAGGAGCAGGTTCTGGAGGAGAAGAGTCCATCAGTGACGCCGTTCTCAGAGACCACCCTCATCAGCAGGAAATCTACCAAGGGATCATCCTTCATCGGCTCAGAGAAAGGAGACAAGGACAAGACAGAGGTGGAAGAAAAGgATGAGGAGATTCCTCCTGTGTCGTTTCTGAAGGTGTTGAAGCTGAACCTTCCTGAGTGGCCCTATATGGTGGTTGGTGTGATCTGTGCCACTATCAACGGGGGCATGCAGCCTTTCTTCGCTGTCATCTTCTCTAAAATCATCGCTGTGTTTGCAGAGCAAGACCAGGAACTAGTTAGACAACGCTCCTCGTTCTACTCTATCATGTTCGCCCTCATTGGAGTCGTCTCCTTCATAACCATGTTTCTGCAGGGATTCTGTTTTGGGAAGGCCGGGGAGATTCTGACCATGAAGCTGAGACTGATGGCCTTTAAAGCCATGATGAGACAGGAGTTGGGCTGGTATGACAGTCACAAGAACAGTGTTGGAGCTCTCACCACTAGACTGGCTACAGACGCAGCACAAGTACAGGGGgcTACAGGAGTGCGTTTGGCCACTCTGGCCCAGAACGTGGCTAACCTGGGCACCAGTCTGATCATCTCGTTTGTGTACGGCTGGCAGCTGACTCTTCTCATCCTGTGTGTGGTACCTGTCATGGCTGTAGCTGGAGGCATACAGATGAAGATGCTCTCTGGTCACGCTGTCAAAGACAAGAAAGAGCTAGAACAGGCTGGCAAGattgcCACAGAGGCCATAGAGAACATCCGTACGGTGGCATCTCTCACCAGAGAGCAGAAGTTTGAGTCTCTGTACCAGGAGAACCTCATAGTGCCTTACAAgAACTCTCAGAAGAAGGCCCATGTGTATGGCATCACATTCTCCTTCTCTCAGGCCATGATCTACTTTGCCTATGCAGGCTGCTTCCGCTTCGGAGCCTGGCTCATAGAGGAAGGCATCATGACCTTTGAAAATGTCTTCCTggTGATCTCTGCAGTGCTGTACGGAGCCATGGCAGTAGGAGAGGCCAACTCCTTCACGCCTAACTATGCCAAAGCCAAGATATCAGCATCTCACCTTATGTTCCTTATCAACAGAGAACCTGCCATAGACAACTGCTCACAGGAGGGAGAAACActggaCCACTTTGATGGTAACGTACGTTTCCAGGGGGTGAGGTTCAACTACCCGTCCCGTCCAGACCTTGCTGTCCTGCAGGGACTGGAGCTGAAGGTGCAGAAGGGCCAGACTCTAGCCCTGGTGGGCAGCAGTGGCTGTGGGAAGAGTACGACCATACAATTACTGGAGAGGTTCTACGACCCACTACAGGGCACAGTgATGTTGGACAACAGTGATGCTAAGAAGCTGAACATCCATTGGCTGAGGGCCCAGATGGGCATCGTATCCCAGGAGCCCGTGCTGTTTGACTGTAGTCTGGCAGAGAACATCGCCTACGGAGACAACACACGCAAAGTTACCATGGAGGAGATCCAGAGTGCTGCTAAAGCTGCCAACATACACAGCTTCATAGACGACCTGCCTCAGAAGTATGACACCCAAGCTGGTGACAAGGGGACCCAGTTGTCAGGAGGGCAGAAGCAGCGTATAGCCATTGCAAGAGCCATCCTCCGCAACCCCAAAGTCCTGCTGCTGGATGAGGCCACCTCCGCACtggacacagagagcgagagggtgGTGCAGGAGGCCCTGGATGTGGCTCGACAGGGCAGGACGTGTATCGTGGTGGCCCACCGCCTTTCCACCATTCAGAACGCTGACCTGATCGCTGTCTTCCAGAAGGGAGTGGTGGTGGAGCAGGGCACTCATCAACAACTACTGTCCCAGAGAGGAGTATACTACTCACTGGTCACCACACAGCTGGGCCATGGCAGaaactgagggaggagaggaggatgggggggagagagaggctgagggtgC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250955 lncRNA downstream 54132 6659745 ~ 6660111 (-) True G219999
TU250944 lncRNA downstream 72088 6638940 ~ 6642155 (-) True G219988
TU250920 lncRNA downstream 107235 6603182 ~ 6607008 (-) True G219970
TU250792 lncRNA downstream 216283 6496695 ~ 6497960 (-) True cf191
TU250753 lncRNA downstream 307175 6405208 ~ 6407068 (-) True G219822
TU250900 lncRNA upstream 29661 6773362 ~ 6774340 (-) True G219952
TU251014 lncRNA upstream 71985 6815686 ~ 6815896 (-) True G220056
TU250884 lncRNA upstream 72584 6816285 ~ 6816505 (-) True G219936
TU251021 lncRNA upstream 80208 6823909 ~ 6824217 (-) True G220063
TU251022 lncRNA upstream 81274 6824975 ~ 6825213 (-) True G220064
XM_021588207.2 mRNA downstream 57355 6656513 ~ 6656888 (-) True LOC110507843
XM_021588265.2 mRNA downstream 90276 6622171 ~ 6623967 (-) True LOC110507876
XM_036967161.1 mRNA downstream 90326 6622171 ~ 6623917 (-) False LOC110507876
XM_036975428.1 mRNA downstream 163845 6527175 ~ 6550398 (-) True LOC110508127
NM_001160659.1 mRNA downstream 214663 6496696 ~ 6499580 (-) False cf191
XM_036967179.1 mRNA upstream 32780 6776481 ~ 6794276 (-) False LOC110507764
XM_036967177.1 mRNA upstream 32780 6776481 ~ 6794278 (-) True LOC110507764
XR_005040324.1 mRNA upstream 122324 6866025 ~ 6869053 (-) False LOC118945258
XR_005040325.1 mRNA upstream 122324 6866025 ~ 6869053 (-) False LOC118945258
XM_021588712.2 mRNA upstream 157777 6901478 ~ 6905095 (-) False LOC110508277
TU250797 other downstream 223228 6486500 ~ 6491015 (-) True LOC110507902
TU250699 other downstream 372630 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other downstream 375430 6332968 ~ 6338813 (-) True G219820
TU250494 other downstream 962149 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 965529 5748158 ~ 5748714 (-) True G219591
TU251084 other upstream 186290 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 186290 6929991 ~ 6932356 (-) False LOC110508304
TU251088 other upstream 186290 6929991 ~ 6931881 (-) False LOC110508304
TU251092 other upstream 186290 6929991 ~ 6932356 (-) True LOC110508304
TU251203 other upstream 205097 6948798 ~ 6950956 (-) True LOC118964351

Expression Profile