RNA id: XR_005040319.1


Basic Information

Item Value
RNA id XR_005040319.1
length 4377
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110507743
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6754839 ~ 6773064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acttctgtgaaatcaaaccgtccacttaggaagcaacactgattgacaatacatttcacatgctgttgtgcaaatggaatagacaacaggtggaaattataggcaattagcaagacactccCAATAAAGGAGTAGTTCTGCAGGTggcaaccacagaccacttctcagttcctatgcttcctggctgatgttttggtcactttcgCAAATAGCGCTAGTAGCAGAGATccagattcagcaccatggatagcGGCCATCGGAACCACCCACGATCTGACATTTGAGAACCACAAGACTGGACAGCGGCTGATACCTCCTGGTGAtcctgttggagtcatgtccaaccTGGTCACCAGGAAGGATCAGCCAGTCatgaaaaataaaatgtactACTTCAATATGGAGAtatcctcaatggcgctgcccatgctgccacagacactataatggcactgatacaaagatgagtcctgaATCTATCTCTATGATTATTCTTCAAGTGATTCTCCCAGCTGCCATTGACGTTGCTCCAGCTTCAGCCAGCCACTGTCCACAGTCTTGAAGTTGGAACTCCCACCAAGTTGACAACATTAAAATggccctcaatggcgctgcccatgctgatATAGCCTTTTGGCTACTAGAGTCCTCTTTCATTCTCTATGAAATAATAGGCAACTGGGCCTGTACAGGAAGTAGCCAAAACCTAAACGAACTCTCTTGTTTCAGCTAGCCTGGGTGTCTATTTCTACTCTCTTGTGAACTCTAAATGCCATAACTCCTTATTGAATTGGCATGCCAAGTGTTGGCTTAACAATGACAGCACTGGAGTTGACATGAGCACAAACCAATCTGGTACCAGGGTATGTTTGGTGTGAAATATTTTCATTAAACCTTTTAGATGGGTGCAGATGTAGGAGAGAATAAAGTACTTTTTTATACTATTGGGATGCACACATAGAAAGTCTCTTCGTCTCCCAAGACCATCGAGGTTACCATCGGTAGCCTAATTCGCTCTAAACAGGAATTTAAACCGCTCAGACTTCCCAGCACTTGGTTTGGGCGTTTTAGCACAACCCCGTGACTGTTTCTCTCCCAAATTACTGGGTGATTTCTGTTCATCCATATCCCTCTTGCCCTATATGTTGACTTTCAACAAACGAGCGAGCGTGCTGGAGTGACGCGGATAGAGCCCGCGGGCGGTGGCGTACACTGTTGAACCCAACCTGCTGATTTAAAAGAAACAGGGACAGCAAATACTGGGCACATACACTGGGGAGATACGACTAACTATGGCGAGGATGGCGTCACGTAGCCTGGGGCTGCATGTAGCTCACAAACAGGACGCTGCCAGAAGCGGAGCTGTGGAGAGGAGGAATCTACTGACTGTCTGCAGGGCTGCGGTTTATTTTCATGGCGAGGTGGTGTATCTCATCTCCAAGCCATGGTTGGTGACAGACACGATAGACGACTCCTCTCCAGAGTTCACCAACTTCGTCTCCATCCTGGAACAGATTCTCAGTCACAGACTCAAAGGTCAGACTACGTGGTTTGGTTATGAGACTCATCGTAGTTTCTGGGATTATGTAAAAGCAGCCTGCAGTAAAGTCTCTCCCAGCTGCATCCACAGCATTGAGAGCATGGAGAATGTCCGCTCCTCCAGagctaagGGTCGGGCGTGGATCAGGCTGGTGCTGATGGAGAAGAGGCTGTCTGAGTACATCTCCTCCGCCCTGAGGGACTTCAAAACCACCAGGAAATGGTATGAGGATGGGGCCATCATGCTAGGTGAGGAGGCGGGGCTGCTAGCAGATACACTCATCGGTCTCAACACCATTGACTTCAGCTTCTGTCTGAAAGGGGAGGGGCTGAATGGAAGCTGCCCAGCGGTGATTGACTATATGCCTTATCTGAAGTCGTTTCAGAGAGAGAACAGCATCAGCAGTGACGAGGAGGAGTTGAGGACCCTGGGGAGCAGCGGCAGCGAGAACATCACCCCTGAAAAGATGGCCGCCAGCACTGCGGAGGCCATCTTAACTGAGCAGAGCAGCTGGGTCTGCAGGTGTAAACGACTCGAGCAGAAATACCGCATGGCACTGGAACAGAAGTGTTATCTGGAAGAGATGGTTCATCTGAGAGAGGCCCAGCTGTCTCAAATGATTCCTCAGAACAAAGCTCTTCAGCAGAGactaacagacacacacctctcacacacactggagaagGAACAACTAGAATACATCGTGCTGGAGCTCCAGGACCAACTGAAGAATTTCCAGAGTCTAGAGCAGCTGTCCCAGACCTCTCTGGAGccctcacacacactcaacctGGACACTAGACCAGCCAGCTCACACTGGCAccaccatgGGAAGGAGGACATCCCCTCTCTGATAGGTCTGTGTGGGTCTCTGCAGTCAGTAGCCAGCAATAAGTCCCTGGCCAGCCTGAAGTCCAGTGAGTGTCTAGCCAGCCCCACCACAGAGATGACCAGTCCTGACCTCACCCCATCCTAGAACCAGAGACCAAGAGATCCAGCACATGGTTTGGAGAAAGAGAGCCAGATTTGGATCCTGCAATTGGAACTTAGCCTttttgaataacattccaccccaTCCCCTCCTAAACCCAGAGATCTAACTTCGTCCCCAGGCTCAATTGATGGATTTACCAGGGATGCAACACAGGTCGTAGAATCATACAACTGTGCATAGAGATTTATTTATTGGGATTTCTATGACTAAATCACATGGAATCTGGATCCATGAACTCTGAGTTTTAAATAAATATTGAAGGAACTCATGGCTCAAAGCATGGGAGCCGCAGTCAATCATTTGGAATTTACAACCCGGACTGACCCTGGAACCAGCGCTTCAGTAATCAGTCCTTCAATGTAAGCGCAGAGCCGTTGGAAAAAACAGGACTGTATTGACCAGGAGCGACCTCATGTTTATTTAATTGTTTGTTGTATATCTGCACTGATGGGAAAATAACTGCATAGTTGAAAGCCAGTTCCGGGTAGGTATGCTGTAGGTATACTGTTGTCACCTATCTTATGTGTTCAGATCACTGCAGACCAAGGAGAAAGTCACTTGACACTATTGGGATGCAGACCTTTTGTGTCACTTAAAGGACTCCTCATGATGTAAACATGCTCAGCATCCCAGAGATTGACAAAACTTGAGGAATTGCTATCTTTAGGATTTATTTAGGGAGGGGAAAAGAGTGAACGTTAGGGTTTGTTTCTCAAGTGTTAAAGCCTGTAGACTAGTGGttctgtttatgcctcttcaaCTTGCAGGTGTTGTTGTCCTGTTACCCTGGCAACTTAAGTGAGCTCTACTATAGATGGCCATGGTGGGTCTGTCTCAGCGGCCAAAAAATACACCTCAAAGAATGGACATATTTAGGTATTGTATTCCTGCCAGAGGACTGGACTATCCTCATTATTTATAAGTCTTTAGAGTAATCATGTTGGAAGTGCCTTGAAATATCTAGAGGAGAACACTTGCTTTTGTCTTCTGTTTCTACGGTCAATCCTCTGGTACCTGACTTGTAGCCATAATCATATTATTGATGGCATTGAATGTATCTCATAAACTATCAAAATGAAGtcgcacactccatatataaactccgtcatttattgggtatttaccaacgtttcggcttcactgtgccttcttcaggcaGTGATGGCGACACGTTGGTAAATAGCCAATAAATTACTgtgagtttatatatggagtgtgcgactttatttgccattagtcagcacctccacacaaacacattgttctgggtgtgcgccagcgcaatttttttacatttatttttaaattgacTGTATCTCATCCACAATCCGTTTTGGATTTAACCACACAGTGTTATCTTTATGCGTCATAAAGGGTTTGTGTTCTCAGGAAATGTTTCCTGTCCAACAGGGTTAGGTTGAACCGTTTGGTTAGGTTGAACATGATAGTCTGTATTGGGATTGCATGTTCTGTCTGACTGCGTTGATTTATTTTGATCAGAGGCATGTAGGGAAAGTGTTCagggtgtgttctgtctgtcactctctcacacacacaaacacagttaatTGTATTGCGATATTGCACATTGATTTTATtactttgatttatttattttctcctgCTATTTTGAATAAACTACTGTACTAAACAATATATTTAGTCTTGTTTTAAAAAAATTGTATTCTGTACCTGTGTATGTTTAGTACAGTATGTTCATTCCCCGTGTATACACATGGATCTCCATGTTTTACCCCTACCATACCCCTAGCGTTAGAGCGGGATGTAACGGTTAACTCAGCAGGCCCCGGTCCAAAATAAAGTCCCTGACAGTAACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249700 lncRNA upstream 19342 6735020 ~ 6735498 (+) True G218986
TU249680 lncRNA upstream 53493 6700848 ~ 6701347 (+) True G218966
TU249591 lncRNA upstream 145356 6556777 ~ 6609484 (+) True G218892
TU249641 lncRNA upstream 155693 6598227 ~ 6599147 (+) True G218929
TU249549 lncRNA upstream 208869 6516868 ~ 6545971 (+) True G218862
TU249612 lncRNA downstream 817 6773881 ~ 6777798 (+) True LOC110507774
TU249734 lncRNA downstream 24810 6797874 ~ 6801798 (+) True G219017
TU249735 lncRNA downstream 25304 6798368 ~ 6801932 (+) True G219018
TU249744 lncRNA downstream 43222 6816286 ~ 6816579 (+) True G219026
TU249856 lncRNA downstream 89875 6862939 ~ 6865651 (+) True G219063
XM_036967164.1 mRNA upstream 42173 6659724 ~ 6712667 (+) False LOC110507826
XM_021588006.2 mRNA downstream 1913 6774977 ~ 6776480 (+) False LOC110507774
XM_021587946.2 mRNA downstream 21483 6794547 ~ 6811294 (+) False LOC110507732
XM_021587937.2 mRNA downstream 21486 6794550 ~ 6811294 (+) False LOC110507732
XM_036967172.1 mRNA downstream 21489 6794553 ~ 6811294 (+) False LOC110507732
XM_036967182.1 mRNA downstream 55619 6828683 ~ 6929400 (+) False LOC110508266
TU249685 other upstream 35677 6717628 ~ 6719163 (+) True G218971
TU249650 other upstream 123239 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 147831 6605322 ~ 6607009 (+) True LOC110520771
TU249525 other upstream 299638 6450338 ~ 6455202 (+) True G218842
TU249359 other upstream 492483 6259937 ~ 6262357 (+) True LOC110534143
TU249730 other downstream 21496 6794560 ~ 6807670 (+) True LOC110507732
TU251120 other downstream 165536 6938600 ~ 6944979 (+) True LOC110520781
TU251106 other downstream 206067 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other downstream 206428 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other downstream 206495 6979559 ~ 6986522 (+) False LOC110508323

Expression Profile