RNA id: XM_021588006.2



Basic Information


Item Value
RNA id XM_021588006.2
length 1082
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110507774
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6773881 ~ 6777798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAAATCAGATTCAGGAGGACTTCGAGAAACTTCACCAGTTTCTACGATATGAAGAGGCAGCCAGGATGGCTGtcctgagggaggaagaggaggatgaagatgatTGACGATGAACAGAGCGATAGCAGCCATTTTAGACACAACGAGAGCCATAAAGAAGGACCTGGTATCTGATGACATCTCATTCCTGCAGAACTACAAGGACATGTTAAAAAGAGCCCAGTGCACAAGCCCAGATCCAGAGCTTGTTTCTGGAGCGCTGATCAATATGGCAAAACACCTGGGCAACCTGCAGGTCAGAGTTTTGGAGAAGATGCTGAAGTCTGTTCAATACACGCCTGTGATTCTGGACCCCAACACTGCCCATCCATGTCTCACCCTGTCTGATGATCTGACCAGTATGAGATTCAGTGATGGGATACGGCTGCTTCCTGACAACCAGAGAGGTTTGATAACTATTGAATGGTCCTGGGCTCTGAGGGCTTTGACTCTGGGACACACAGTTGGGATACAGACGTCGGGGACAATACAGTATGGTTTGTAGGTGTAGTCTATAAGTCTGTCCAGAGGAAGGGAGTGGTACAGACTGGACTCTGGCGTGTAGGCTATTATAATGATAAATACTGGGCACGTTGTCCAAAAGGGCCACAGACTGTCCTGACACTGGAAAATAAACCCCATCGGATCAGAGTGCAGCTGGACTGGAACAGAGATACACTGTCCTTTTACGACCTTgataataacacacacatacacacgttcaCACACTTTTACAGAGAGATTGTTTCCATACATCAACATTGGCAGTAATCTCTACGCTGCTAGGATCTTACCAGGGAAAGCCTCTGTAACAGTGGAACAGCACATTATACCTCCCCATGCTAGCCCTTCTTCCTTTTAACTTGATCAGTTGTTGTGGTACGCTGACGCAACGGAAGGCACCACGACCTCCGTGATTTAGATTTGTTCAACAGGATTCAATTATGAATTGTATTATCATATGAATTATTATGTTAACAAACTACTGGATTGAACCAAATCACAAATCTTTGCTGATCTAATAAAAACAATTGATTCAACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU249611 lncRNA upstream 1934 6772339 ~ 6773043 (+) True LOC110507743
TU249700 lncRNA upstream 39479 6735020 ~ 6735498 (+) True G218986
TU249680 lncRNA upstream 73630 6700848 ~ 6701347 (+) True G218966
TU249591 lncRNA upstream 165493 6556777 ~ 6609484 (+) True G218892
TU249641 lncRNA upstream 175830 6598227 ~ 6599147 (+) True G218929
TU249734 lncRNA downstream 21394 6797874 ~ 6801798 (+) True G219017
TU249735 lncRNA downstream 21888 6798368 ~ 6801932 (+) True G219018
TU249744 lncRNA downstream 39806 6816286 ~ 6816579 (+) True G219026
TU249856 lncRNA downstream 86459 6862939 ~ 6865651 (+) True G219063
TU249802 lncRNA downstream 144621 6921101 ~ 6929400 (+) True LOC110508266
XM_036967173.1 mRNA upstream 1913 6754839 ~ 6773064 (+) False LOC110507743
XM_021587964.2 mRNA upstream 1913 6754840 ~ 6773064 (+) False LOC110507743
XM_021587981.2 mRNA upstream 1913 6754840 ~ 6773064 (+) False LOC110507743
XM_036967175.1 mRNA upstream 1913 6754840 ~ 6773064 (+) False LOC110507743
XR_005040319.1 mRNA upstream 1913 6754840 ~ 6773064 (+) False LOC110507743
XM_021587946.2 mRNA downstream 18067 6794547 ~ 6811294 (+) False LOC110507732
XM_021587937.2 mRNA downstream 18070 6794550 ~ 6811294 (+) False LOC110507732
XM_036967172.1 mRNA downstream 18073 6794553 ~ 6811294 (+) False LOC110507732
XM_036967182.1 mRNA downstream 52203 6828683 ~ 6929400 (+) False LOC110508266
XR_005040321.1 mRNA downstream 52203 6828683 ~ 6929400 (+) False LOC110508266
TU249685 other upstream 55814 6717628 ~ 6719163 (+) True G218971
TU249650 other upstream 143376 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 167968 6605322 ~ 6607009 (+) True LOC110520771
TU249525 other upstream 319775 6450338 ~ 6455202 (+) True G218842
TU249359 other upstream 512620 6259937 ~ 6262357 (+) True LOC110534143
TU249730 other downstream 18080 6794560 ~ 6807670 (+) True LOC110507732
TU251120 other downstream 162120 6938600 ~ 6944979 (+) True LOC110520781
TU251106 other downstream 202651 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other downstream 203012 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other downstream 203079 6979559 ~ 6986522 (+) False LOC110508323

Expression Profile