RNA id: XM_036967179.1


Basic Information

Item Value
RNA id XM_036967179.1
length 2423
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110507764
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6776481 ~ 6794278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAACTAGCTATTCTTATTTCACTTTATCTAGTTGAATGAAGCCATGTATTGTGGAATTGCCCATGAAGCACATGTACGCAGATACGAGCTATAAGAATACCGGGACATCACAAATGGGTTTGCTTTGGATTCCGTTGCTGACAAAGAGCAATACTACTTGTCCACTGTGGAAGAGTTGCTAGCTAAATAAGTTAGCTAGCTTCTAGTTCCTGCAATATAGCTAGCAAAAAGCTTCTATAAGATGTTGGTTTCCTGCTCAGGGGCTCTCCTGACGTCATTGTTTGTCACACCTCTGGATGTTGTCAAGATAAGACTCCAGGCTCAGAAAAGTCCCTTTCCCAAAGGGAAATGCTTTGTGTACTGCAATGGCCTGATGGACCATACCTGTGTGTGTACGAACGGCAACTCCAAGGCCTGGTACAAGGCCCCCGGCCACTTCAACGGCACTCTGGATGCCTTTATTAAGATAGGCCGCAGGGAAGGTATCAAGTCGTTATGGAGCGGCCTCCCTCCAACCCTTATCATGGCGGTCCCGGCGACAGTGATCTACTTCACGTGTTACGACCAACTGCGTGCTGCCCTGAGGGTCAGGATGGGGTCACACGCTGAGGAGGCGCCTTTACTAGCAGGCGCCCTCGCCAGAGTGGGCTCTGTGACAGTGATCAGTCCGTTGGAGCTGATCCGTACTAAGATGCAGTCCCAGAGAAGTTTGTACAGGGAGCTGAGTGAGGTTATCCACTCTGCAGTACGCAACGAGGGCTGGCGGTCTCTCTGGAGGGGCTGGGGACCCACACTGCTTAGAGACGTGCCCTTCTCAGCCATGTACTGGTATAACTATGAGAAGGGGAAGGCGTGGCTGTGTAAGCACAACAATATCAGAGAGCCAACGTTTGCCATCACCTTCATATCCGGAGCGGTGTCTGGATCAATCGCTTCCATAGTAACTCTTCCCTTCGACGTTGTGAAGACCAGGAGGCAGGTGGAGATAGGGGAACTCCAGGCTATGAATTTGTCGTCCAAggcctcctcctccactctcagtGTGATGACCAAGATTGTGGCTGAGAACGGAGTGGGTGGACTGTTTGTAGGTTTCCTTCCCAGGGTGATCAAGGTGGCCCCAGCCTGTGCCATTATGATCAGCTGTTATGAGTTTGGGAAAGCCTTCTTCCGCAAGCACAACCAGGAGAGGCTGCTGACCAGCACCACCTGACCTGACTAgggcctctcacacacacacaaaccaccacCATAGACAATACCAAGAACACAATCCGCCATCGCCAACAGTAGGTATTGGCTACTTCTACCTTTCCCAGGGTCCTTAGAGATTTTCAGATGTAACTTTGCATGCCTGTGTCCTCCCAGCTGCTTAGACACTCCAACACCCCTCACTGTAAAGTGTGATCTGTCATGTGACTAGCTGGAAGTAGCCAATGTTGGCGTTTAGGACCCAAGAACGCCAGGACTTGATTCTGTTCCAAAGCAGGTAATACTGGCAGACATGAAAACAATATTGAAGACAAATATTTGTAGGTAATCAATATTATTCATATTTTCTTATTTCTCAATCAAGGTATACTGCTCTTAATCACCATACTAATTGTGACaagagaaaatagtaaaagtgcacagattgtatttgaaatatcATTTTCACAACTACTTAAAAATTATTTGCATAATCTTTTTCCTGTGCACCCATGGTGAAATATCATGTTATGAAGTGCATTTAATTACACTGGCCTGTAGGTGTTAGAGACTTATCTGTAACCAGAAACTGGGGGGGTCATATTGGACAAGTGTTTTATCCCATTATGTTAGTTATTGAGGTATGGGGGTTGTGTGTACTGTGCCATCCGGGGTCTGACAGTAATAATAATCATTTGATGgatgcttatatttgtcctgtttcacacatgtacacGTGTGTATCATAcccatgtctgaaatgtgttttttgcatatcccgaCACCCTCAGAGTGGAGTCGGGGACAGTAGAGATGAGGGTCAAAGCTGTGGATGAGGCGGGATAACTTCTGGTTAGTAGTTTCTGTCCCGCAGAACCCTCTCATTCCCTGCCGCTTTCTCGATCTCAATTCATGACCCTATCACCTCATTCTCAACCCTATTGGAAGAGAAGGCCCAAGGTCCTTCAGGATACATGTTCTGTTCAGTGCCAGACTGCCAGTTTAAACCTGAAACTCTTAACTTGCACCTGTTCCAGAATCCCATATTCAATCCCCAGTCAGCCAGACATGGACTGTGAACTGTGACAACCTGTGCATGTTCTCAAAACATGTAGCAATGATATATATTTCTATTGTTTAATATATTCTACAATGATCACCTGTAGTGACACATTTCCCAACTTTGTACAGAAATACATAGAGAATAAAAGTCACATTTTGACATTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250900 lncRNA downstream 2141 6773362 ~ 6774340 (-) True G219952
TU250955 lncRNA downstream 116370 6659745 ~ 6660111 (-) True G219999
TU250944 lncRNA downstream 134326 6638940 ~ 6642155 (-) True G219988
TU250920 lncRNA downstream 169473 6603182 ~ 6607008 (-) True G219970
TU250792 lncRNA downstream 278521 6496695 ~ 6497960 (-) True cf191
TU251014 lncRNA upstream 21410 6815686 ~ 6815896 (-) True G220056
TU250884 lncRNA upstream 22009 6816285 ~ 6816505 (-) True G219936
TU251021 lncRNA upstream 29633 6823909 ~ 6824217 (-) True G220063
TU251022 lncRNA upstream 30699 6824975 ~ 6825213 (-) True G220064
TU251035 lncRNA upstream 46246 6840522 ~ 6842132 (-) True G220074
XM_036967167.1 mRNA downstream 31808 6714243 ~ 6744673 (-) True LOC110507788
XM_036967168.1 mRNA downstream 31847 6714243 ~ 6744634 (-) False LOC110507788
XM_036967169.1 mRNA downstream 31847 6714243 ~ 6744634 (-) False LOC110507788
XM_036967170.1 mRNA downstream 31847 6714243 ~ 6744634 (-) False LOC110507788
XM_036967171.1 mRNA downstream 32780 6714243 ~ 6743701 (-) False LOC110507788
XR_005040324.1 mRNA upstream 71749 6866025 ~ 6869053 (-) False LOC118945258
XR_005040325.1 mRNA upstream 71749 6866025 ~ 6869053 (-) False LOC118945258
XM_021588712.2 mRNA upstream 107202 6901478 ~ 6905095 (-) False LOC110508277
XM_021588703.2 mRNA upstream 107202 6901478 ~ 6905283 (-) False LOC110508277
XM_021588708.2 mRNA upstream 107202 6901478 ~ 6905286 (-) True LOC110508277
TU250797 other downstream 285466 6486500 ~ 6491015 (-) True LOC110507902
TU250699 other downstream 434868 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other downstream 437668 6332968 ~ 6338813 (-) True G219820
TU250494 other downstream 1024387 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 1027767 5748158 ~ 5748714 (-) True G219591
TU251084 other upstream 135715 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 135715 6929991 ~ 6932356 (-) False LOC110508304
TU251088 other upstream 135715 6929991 ~ 6931881 (-) False LOC110508304
TU251092 other upstream 135715 6929991 ~ 6932356 (-) True LOC110508304
TU251203 other upstream 154522 6948798 ~ 6950956 (-) True LOC118964351

Expression Profile