RNA id: XM_021587937.2


Basic Information

Item Value
RNA id XM_021587937.2
length 2732
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110507732
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6794547 ~ 6811294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATTTTTCGAAGCGGGAAAGGACATAGAACATCTATGGCACAACAAAATATTATGGCAACAAAGTAATCTTAGCGGAACCAAAACAATTTAAAGATACTATTGAAATTTCGTGAAAATCGGTTGTAACAAATGTCAATTTACGGAAATATATTGTTTTACAAGACCACAGGCTCTCACGAGGAGAATACAATGATATTCTATTCTCCTCTTAAATTATGAAATCTAGACGCACCCAAAAGTCTACAAAACCCCGTTTACAAGACCCCAAACTCGCTGATAAGGGGCACAAGTCAGCCTCGAAAAGCCATGCCAAACCACCATGTGAATCGTATCCTGCCCCAAAAAAGCCTTTCACTGGGAAACTATTCTACTTAGATTTGCCATCAAACAGAAGAGCAGAGACATTAGAGAATGATATCAAAAGGTTTGGAGGGACGGTGGAGAAATTCTTCAGCAAGGAGATCAAGTACCTGGTGTCTAATAAGAGAGAGGCCAGGTATGTGCAGTGTCATGGCCGCGACCCTCTTGTCCCAAGCCCTGACTCTGGGCACAGCTCCCCCCACCCTCGCCCCCATCCCGGCAGCCACAGAGACAGCCTCAAAGGAAGCTCCCAGGGCCAGGCAAACATGGTGGTCATAAGCAGGGGCAAGTCTTTTGTGAAGAGAGTTGTAAAAGAGCAGGTGAGAATACAGGTCAACGAGATCCTAACCAATGCTCTGGAGTGGGGAGTGAAAATCCTGTATattgatgATGTAATGGCTTATATGGAAAAGAAGAAAAGTAATGTTAAGTATACTGCTGAAAAGCCAACCGCAACCACAGCTGCTGTCAAAAAAAGTGCCAAAAGAGAACCTACAGGAAAACCATCCTTCCAGAAGTATAAGGGTGGAAGGATCCGTAAACCCTTTGTAAAGGTAGTGGACTCCAGCAGACATTACCGTCCAATTTATCTGGCCATGCCGAACATGCCAGAGTTTAACCTAACGTCAGCTCCCCCCTGCAGTCCATTCTATGTAGAGGACCAGGAACACTCTGGGAAGAGACCTAAAGTGCACGGAAACCGAGGGGCGAGAGTGTCAgccagtgaggagagggggcAGGACCGGGCCAGGAGGAACAGGGAGAAGAAACGTGGAGGCTACTGCGAGTGCTGCACGCTCAAATACAACAACATCAAAGCTCACCTGCGGAGTGAGCAGCACAAGGCCTTCTCCAGAAGTGATGAGTACCTGGTGGTGGACAGGCTCATCACCACACTGCCCTTCAACTTCAGTCATGTCAAAACAACACAAACTCCAACCACAAGGTCAAAGTACAGCATAACCTCCCAGTTGTGTGTTCCTGGACCCAGCatacagatggaggaagagaaggagggaggtgtGGAAACCAAAGAGCTGAAGGGGGGATTAATGTCCCTCTGGTCTACTACAGTGGAGCCCCCTCTCTCCCAGAGTGTGGAAAACCCCTTGGAACAGCCTCGGAAGCGCAGCCGAGGAGCCCCTGTTCCCCACAGCACCAGCGAGGGGGAGAAGAGGTGCTCTTACGTCCCAGACAGACCCCAGCCCAAGCACAGATCCCTGTCCTGCAAACAACGCTGCCAACGGGGATCCCCCCGCAAGCACCGCCAGAGGGCTGGGCTGAGTCAGACACCTGTGTCTAATGCAGAAATAGACCCTTCTACCTTTGACTCTGTCGCTAACCCCAGACTTTCCCATCAGGGCCAGAGAACTCACACAGACAAAGATGGCCGCTCTTCATTTAGTCACACAGAGGATTTACAATGTGGCGATCCAGCTGGACGTGTGAAGGTCCCTTCCAGTCAGCACAAGGTTGCAGGGCCTTCAGAACACCACAAGCTCAGAGCTTTAGAGGAGAGTGAACTGAGTCATGATACGTTGGCTGGGGATACTCTTTCCGGGAATGCTGGGGGTGTTCCGGAGCTCGAGGCAGGTGACACGGAGACACACATCCCTCCTCCTGCCAGGACATTACAGAGGAGGGTCAGGGATTACAGACGGAAGAGAAGGAAAGTTGAGAAGCAGCAGAATGCTCAGGAGCAGGAAAAAACGTGCAATGTTCCCAGCAGCTCTCTGCTGAACCTCTGGCAGCTGTTCCACTCCAGTGAGGACATGGAGTGTGAGTTCAGAGGCTTTCCCAGCTGTTCCACTCCAGTGAGGACATGGAGTGTGAGTTCAGAGGCTTTCCCAGCTGTTCCACTCCAGTGAGGACATGGAGTGCGAGTTCAGAGGCTTTCCCAGCTGTTCCACTCCAGTGAGGACATAGACTGGGAGTTCCAGGCCTTCCCcagctagagaggagaggggggggttaGGGTAACCCAGAATCTTCCCAATATGAGCGCTAACTTGTTACGGACTCACCATATGAACTTATTGTATGACAGTTTCATTGAGTGACATAGCAGATCTATATGGGAACCCATTGACTGTGGCTCTTTAAACCTATGacttctataaagggaatagttcCCTTCAGGTTGGGAGGGTGGTGGCGCAACACTGTTGTGTTGATTTAACCATGGCAGCTTCTAGTCTACCTGGCTATTTTAACATGACTGGTTTTATCTGGAGAACAGGCTGGAGCACTATCCTCGGTTCTGTACAACGCCTGCATGTGTTCTGGTGTCCAGAGGAACTGTATGGTTGTGTTTTTGGTATGTGgtattgtacattttttttttattaaaagggATACAACCGAAGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249612 lncRNA upstream 16752 6773881 ~ 6777798 (+) True LOC110507774
TU249611 lncRNA upstream 21507 6772339 ~ 6773043 (+) True LOC110507743
TU249700 lncRNA upstream 59052 6735020 ~ 6735498 (+) True G218986
TU249680 lncRNA upstream 93203 6700848 ~ 6701347 (+) True G218966
TU249641 lncRNA upstream 195403 6598227 ~ 6599147 (+) True G218929
TU249744 lncRNA downstream 4992 6816286 ~ 6816579 (+) True G219026
TU249856 lncRNA downstream 51645 6862939 ~ 6865651 (+) True G219063
TU249802 lncRNA downstream 109807 6921101 ~ 6929400 (+) True LOC110508266
TU251128 lncRNA downstream 142855 6954149 ~ 6954739 (+) False G220134
TU251129 lncRNA downstream 142855 6954149 ~ 6954739 (+) False G220134
XM_021588006.2 mRNA upstream 18070 6774977 ~ 6776480 (+) False LOC110507774
XR_005040319.1 mRNA upstream 21486 6754840 ~ 6773064 (+) False LOC110507743
XM_036967182.1 mRNA downstream 17389 6828683 ~ 6929400 (+) False LOC110508266
XR_005040321.1 mRNA downstream 17389 6828683 ~ 6929400 (+) False LOC110508266
XR_005040322.1 mRNA downstream 17389 6828683 ~ 6929400 (+) False LOC110508266
XM_036967187.1 mRNA downstream 17395 6828689 ~ 6929400 (+) False LOC110508266
XM_036967219.1 mRNA downstream 126306 6937600 ~ 6947976 (+) False LOC110520781
TU249685 other upstream 75387 6717628 ~ 6719163 (+) True G218971
TU249650 other upstream 162949 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 187541 6605322 ~ 6607009 (+) True LOC110520771
TU249525 other upstream 339348 6450338 ~ 6455202 (+) True G218842
TU249359 other upstream 532193 6259937 ~ 6262357 (+) True LOC110534143
TU251120 other downstream 127306 6938600 ~ 6944979 (+) True LOC110520781
TU251106 other downstream 167837 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other downstream 168198 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other downstream 168265 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other downstream 170275 6981569 ~ 6986522 (+) False LOC110508323

Expression Profile