RNA id: XR_005040321.1


Basic Information

Item Value
RNA id XR_005040321.1
length 8627
RNA type mRNA
GC content 0.47
exon number 31
gene id LOC110508266
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6828683 ~ 6929400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTCAGTGATTGTGCCCTTCTATGATTATGCGCAGAAGCTGTCAGAAGGTAGTCTAGGTCTGTATGGAGATGGAGCGTGCACACTACAGTTCCCGACATCCCATCTCGGCAATCGCTGTTCTCCTCGCATGTTTACGCATGAGGCGCTTCTGCAGTGAGCTACTGGATATTGATGTGCTTTAATGtgtccccactcctctcctcttacctctcctccttctccgcTCTGTCCATAGAGACTCAGCGCGCTCAGATGCCTTGGCGTTCTAGCGGTAGAAACAGCAGCGTGAGCGTCTCAATGCAGGGGCAGCAAGAGCACCCCGATGGCCACCAGCACAAGAGACTGCGCTAAGCAGACGACCAGCGCGCGCGTTCATCTATGCTTCTCAACCCCGAACCTCCTCTAGCGAAGAGAGAGGTGCCCAAATCCGTTTTAGGATATCGCTTTTTTTTGTCCCTTTTTTTGTCCATTCGATGAAGAACTGATGACGATGTATCGGCGATGGTGGATTTCCCTTTTGTGCGTCTATGGACTGATGTGCATCGTTCATTCCAGCAATCATATACCTCGAAATGGAGACGCCTTGTCGCAGGCGAAGGCTGTTCGTGATGCGAGCAGGTTCGCCGGGAAGGAGGACACGGTCCCTCTCCGTCTGCTCTACAGCATGCACAACCACAGTCAAATCACCCACGATGTCATCAGCACCAGGACTAGAGCCAGTTCCAGCCCCACACAGGGGAACCACGTGGCCCAAGCCAGCTTCCAGGTGGACGCGTTTGGTGAGCAGTTCATCTTGGATGTTGAACTGAACCATGATCTTCTGTCTTCAAAGTACATGGAGAGGCATATTTCAGAAAATGGGAAGGCTGTCATCTTCAAAggaggaGAACATTGTTATTACCAGGGGATAGTGCGGGACATCCCTGAATCCTTCGTGGCCCTCTCCACCTGCCACGGCCTGCAtgggATGTTCTTTGATGGGAATCACACCTACATGATCGAGCCTGGAGGAAAGGACCACATCAGCGGTGATGTCCAGATCCACATGATCTATAAATCAGCAGGACAAGAGGCAGCAGCATACTTCCTTCCTATTGTTGACCTCCCAGAGCCTCCTTTCCCCAGCCCTCCATTTCCTGGGTCAAAGATCATCCACAGGAGGAAGAAGAGACAGGCCCCGCGGGTTGGAGGCAGTGTAACCGAGGAGACCAAGTACATCGAGCTGATGGTGATCAACGACCATCTGATGtataaAAAGCATCGTCTCTCTGTTGGTCAGACGAATAACTACGCTAAGTCTGTGGTCAATATGGCTGATATGATCTTCAAGGAGCAGCTCAACACCCGCATCGTGCTGGTTGCCATGGAGACGTGGGCGGCTGACAACCGGTTCAACATCGACGACGACCCCATGATGACCTTGAGGGAGTTCATGAAGTACAGACGAGACTTCATCAAGGAGAAGTGTGACTCTGTGCATCTTTTCTCAGGGAACCGGTTCCATAGCAGCTGGGGAGGAGCTTCCTATATGGGAGGAGTCTGTTCTCTAACTAAAGGAGGAGGAGTCAATGAGTATGGCAAGACAGATGAGATGGCCATAACCCTGGCCCAGTCTCTGGGACAAAACATTGGCATATTTTCTGACAAGAAGAGGATCCTCaacgGCGAGTGCAAGTGTGATGACCGTTGGTCTGGCTGCATCATGGATGATGTTGGcttctacctgcCCAAGAGGTTCTCCAACTGCAATGTGGAGGAGTACCACACCTTCCTCAACAGTGGTGGTGGAGCCTGTCTCTTCAACAAACCCataaagCTGGTTGACCCTCCAGAGTGTGGGAATGGTTTGGTGGAGCCAGGGGAGGAGTGTGACTGTGGTAGCCCAGCGGAgtgcgagagggagggagagaagtgcTGTCAGAAGTGTACACTCACACAAGGCTCAAAGTGTAGCGACGGACTCTGCTGTAACAACTGTCAGATGGAGTTTATGGGCGTGGTGTGTAGGGAGGCAGTGAATGACTGTGATATTCCAGAGAACTGCACTGGTAACTCCAGCCAGTGTCCCCCGAACGTGCACAAGATGGACGGCTACTCATGTGAAAAGGAACAGGGGCGTTGCTTCAATGGGAGGTGCAAGACCAAAGACAGACAGTGCAAGTACCTGTGGGGAGAGAAGGCGACCGCTGCTGATAAGTTCTGTTATGAGAAGTTGAATATCGAGGGGACAGAGAAGGGGAACTGTGGGAAGGACAAAGACACATGGGTCCAATGCAACAAGCAAGACGTGCATTGTGGGTACCTGCTATGTTCCAACATATCGCCGGCCCCCCGACTAGGAGAGTTGCAGGGGGGACTGACGTCCTTCTCTGTTGCACAGCACAGTGCCTCGCTGgactgcagTGGGGGTCATGTGATGATAGACGGGGACAGTGACCTGGGCTATGTGGAGGATGGGACAGCCTGTGGGACAGAGAGGGTCTGCTTCAACCACAAGTGTCTGCCCCTTCAGGAGTTCAACTTCAGCACCTGCCCTGGAACCACCGAGAAGACCATCTGTTCTGGACACGGGaTTTGTAGTAACgagctgaagtgtgtgtgtcacTTGGGTTGGACTGGAGACGATTGTAACTCCACGTCTCCTCTCAGTTACCTGGTGGTTGGACCCACCGCCTCTGTATCAGgtATCACCAGTACTAACATCATCATCGGGGCCATCGCTGGCTCCATTCTGTTCCTGGCTCTCATCCTGGCCATCACCGCCTGGGGATACAAGAGCTACAGACAGCGGTGCTACGTTGAGTCAGAGGTTCACAGAAGATTCTGCAGGCAAATGCCTCCGGGTGACTATGTGAAGAAACCCGGGGATGCAGACTCGTTCTACAGTGACCTGGCCCCTGGGGTCAGCACCAACTCAGGCTGTAGCTCCAAGAAgaggtctggctgtctgtctaacCTGCAGATGTACacgctctctttccccccctccatCGCCTCCATCTCACAAAACATCTCTCTGTTTGCATTCAGGTCTAACGGTCTGTCCCACTCGTGGAGCGAGCGAATCCCTGATGCCAAACACATCTCTGACATTTGTGAGAACGGACGACCCAGGAGCAACTCATGGcaagGAAATCTGAGTGGAAATCGCAAGAAGTCGAAAGGGAAGAAGTTCCGTCCTCGCTCCAACTCTACAGAGACGCTCTCCCCGGCGAAGTCGCCCACCTCCTCCACGGGGTCCATTGCATCCAGCCGGAGGTACCCTTACCCCATGCCCCCCCTCCCCGACGACCAGAGGAAGGCCAACAGGCAGAGTGCCAGGCTGTGGGAGACTTCAATATAACACTCCTGTTATCTACTCTGCAAAACTACTTAAGAACTACATTTTCCTCCACTTTTCTATGAATTAAAAAATACAATGCAAAACAAAATTGAAACAAAATTACGAAAAAAGTGAGCAACTGGGTGTGAGCGGAAAAGAGAAGcggaggaagatgaagaggaggagggtgtgagagtgtgtgagagtgtgtgcgaGGTCTGTCAGACCTGACCTGCTCAGTAGGGGACGCTACAGGGGCCATCTGTCATTCCTACGCTGACAAGCCAAGACAGAACGAAGCAACACAAGATCCCTTTCAGATTAGTTGGAGATCCACCAGAGATCAGCCCTTCACTCATCGGTGAGGAAAAAGCGAAGCTGTTGTGATGGTAACAgtgcagacagagaggagagtccTCGTTGTGGATGTCTCCCCCACTCCCAACACCCCAACGTCCCCCCAGCTTCCACCACACTCTTCAAGCTCCTCCAAAAACTGTCCCACCTTACCTTACTCACCTCTCCCCCCAACCCCCCTCTAGCCCTACCCCTATGTAAACTCTCTCCTCTGATTGGTGCTCCTCTCTGTTGAGGGGCGCGGACAGCTATCATATCGGCAGATTTCTCTACCATTTTGAAGCACGCTGTTTAATTACTGTAGAAAACTCCAACACTGTATGCATGAGAACCCCCTGTTAATCAACTCTTCCTAGTGTCACAAAGAAGAAGAAGTCTGGGACGGACAGCATGTGGGGGATGGTGATGTCATACGTACTGTAGGCCTTTAAGCTTTCTTTACATTATAGGCTTCTTCTATCTCTGTGATCAGCGACTCATTATGAACTGTATCACACATTATACTAGCCAACTGCCCCTGACATGGACCCTAGACCCTAGACCCTAGACCCTAGCCACTCTGTTCTCTTTCTTTCGCCGTGTCAGGTTTTCCTGAAGGATTTGGTTATCGTTGTAAATATGTACAGCTTAAAGGCAGAGTAATGTGTGCTTTTCTTTTTTACTTACTGGGAGGCGAATGATGAAGGGatgctccccctctcctcctcctgctgtggTTCGTGTTGTAGACAGACAGGGTCTCCGTAGGTCTTTGTAGAGACCCCGTACTTGgtttttctgtctgtttctctcttttcatttctGGCTgaactctctcttctctcccgtgTGGCTGTGTGAACACTCCAGCTTTCTTTTTCTTCCACAGCAGAATGTACTAACAGTGTTCTATATTTCCTCTTTGTGTCATCCCTTTCTCTGAGTAATGCACACTCAGTCACAGCCCGTCATATTTAAGACAGGAAACTTAAGAATGTCATTGATTTATTACATTAACTGAGCATTTTATCCATTTGGATATTGAGAATGATGAAAATATTTTGAACTAACATCGTCCTATGAGCCCTTCCTCGCTACAGAGGGGAGAGAACAAGTGTTCTTTTGTAGTTTTAGATGTGATATACATGTTCATTTGGCCATGGTGGTTTAGAGAAgttggagaaatgtcctgtgaCTATAATCATTCCACACGGTCTGTGTGTACAGCAGGGACAgactggccatctggcattttGGGCAAATGCAAGATGGCCTGGTCCATTTTTAACACAGTGGGCCACAGTGGGTCTTacttgttttttgggggggcaaaATGATAATTATCTTGCTAATAATGGGGGCCTCGAGGAAAGAAATGAGCTGTTGTGTTTAAAATGCCAGAgccgatttctggtcccagtccgcccctggtGTACAGTGTGAGACCAGACATAACAGATAGATACAACTGGAACCGACAACGCCACTGAGATCCAACTGGATGATGTGGGAATAACATTGAACATTGTGTCAGATGAATTTGGAATTTGTTTAGATAAAATtattaaaatgtgcatttttgcttttgttttgtttcctACTGTAAGTTTTCCCTGCTGTCTGTAAATGATGAAGTGTCCTGTACAGTGCTTGCTGTTTGAGATTTATAAGACCAACAGAATGACAATGGATCTACTAGCTAGCACTCTATCGCTGTTCTCTGGTAATCTGTCTGTGAGGCTGTAATACGAAATAAGCATGTCATTGAAATAGTTTTTTCCTTGATTGCCAATTGCTGTTATCTTCTTGGAATTTCATACCATAAACCCCATATCAGTAGTGAACAGGTTTTCAACATAATCAACCAGGTCTCAAACATTTTCATGAATGGCCCGAGTAATCTAGTGGTTTAAATGTGGCTTAAGATTCAGGTTCTTACCTACTCAGAGTAGGATAAAGTGTCCCTAGTcactgatccaaggtcagttttgtatCTTACCCCCCTGATGGTAAATGTTGTGAATTGGGGAGTGGAaagctgatcttagatctgtgGCTAAAGGGAAACTTATTTGTACAGAAGTCACAACCCCCATCCTGTAGTTACTGTACTGTCCATATCAGTTAAGCCTGCTGTATGTTAACTCCGTATGCTTAAGTTTAAAATGTGGGCACTGATCGTTTTGATTTTCTACTGTATGCATTATGACTGCAAAGATATTAAGATCACCACAATATCACATTAATATTGATACTGTATGACAAGTCTTTACTCTTAAGTACTTTTATATGTTCACTTCTCAGTGTTGTGTACAGCCGTTATTCAGGCAGACCAACTGCATTATTGTTCTTCTGTGCGTTGAGTGGAATGGAGATATGATACGGCCATTTTAGTTTTTTAAAGCACACACTCATCTCGGACCGCTCTGGCATGTGAAGATCTGTACATGTCTTCTATGTTATGATGGGACGCAGCTATGGCAACATGGGGTGCATTATGCTATAGAGATCTGTACAGGTGAATGCATGTTGACTAAAGCTCTTATCACTCTTGTCTTATTTCAATTACGATATGATTGGCTGGTGCTTAGTAACTTGAGTTTTGACCAAGGGATTCCCTAGGCCGTGGTAATATGAAAATAAAGGATCATACTTGTCAAGCAATATTTAAAATATCATACTGTCTTAATACTGACATCTATGATCATTTACCTGCAGGTCATAGGATTGAGGTATATTAGACGTTAGGATGGTGGCAGGTGGAGCCTGTCCAGGTAACAAGATGTAACTTGTCTGATGTGTGTTATCTGTATTAGTGACTTGACTGACGTAACCCAACCGGACCCACAGAGAAACGTCCAAACGCTCACAAAGTAGGGACAGATTGTTGAATGTATCAATACAACCAAGCACCAACCACCCAACCGTAGCCTGTGGAGATGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGAAGTCTGAGATGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAACGCACCATGAAGTCTGAGATGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAACGCACCATGAAGTCTGAGATGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAACGCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGATAAGTAGGTTATATCAGGCCTCTGAACGCACCATGAAGTCTACTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGATAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGATAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCTGAGAAGTAGGTTATATCAGGCCTCTGAATCCACCATGCAGTCCTGCTGCAGTATGCTCCTACTGCGACTATATGTACCGCTACAAAATCTATATACAGTCGGTTCCCAAATGATTGCCACCCTGTATGAGCAATGATGActgtaaaataaatcattcaaatactgACCTAAATTGTAACAAAAAAAATGGGAAATGATATTATTTGATAATCCTTTTGCTCAGAGAAAGATCTACCTCAAAAAGGTTAGGGGTCAGAATGATTGAAACGCCAAAGGGTTCttataaagtagtcaaaagtttcttatttggtcccatattcctacagcacacaatgactacaccAAGCTTGTGACTCTAAAAACTTGTTGGATGCAAAAATgtgtcattgcgtgctaggaatatgggaccaaataaacTTTGGACTGACTTTATTTCTAAGAATCTTTAGGGGTGTCAATTTTGACATTCCTTTGAGAAAAAtaagtattacttgttaaactaTCTTTCACTGAGCAACTGTATTGGTATAAATCAATAGTTTCccactttaaaaaaatacaatatagcTTAGTATTTTAATTATTTCACGCAGTCATTATTGCTCAGCTTTATGGAAGGTGTCAATCATTAAGATCCCACTGTATAATTACAGCACTTGTCTTTTACTGTATGCTGTACATAGACTGACAATGCAGAAATCAATGcccatatgttttttttttcttacaaTATCATTCAGTAttgtaatatatttaatataaaaTAAAACTTTCAGCGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249744 lncRNA upstream 12104 6816286 ~ 6816579 (+) True G219026
TU249735 lncRNA upstream 26751 6798368 ~ 6801932 (+) True G219018
TU249734 lncRNA upstream 26885 6797874 ~ 6801798 (+) True G219017
TU249612 lncRNA upstream 50885 6773881 ~ 6777798 (+) True LOC110507774
TU249611 lncRNA upstream 55640 6772339 ~ 6773043 (+) True LOC110507743
TU251128 lncRNA downstream 24749 6954149 ~ 6954739 (+) False G220134
TU251129 lncRNA downstream 24749 6954149 ~ 6954739 (+) False G220134
TU251130 lncRNA downstream 24749 6954149 ~ 6954739 (+) False G220134
TU251131 lncRNA downstream 24749 6954149 ~ 6954739 (+) False G220134
TU251132 lncRNA downstream 24749 6954149 ~ 6954739 (+) True G220134
XM_021587946.2 mRNA upstream 17389 6794547 ~ 6811294 (+) False LOC110507732
XM_021587937.2 mRNA upstream 17389 6794550 ~ 6811294 (+) False LOC110507732
XM_036967172.1 mRNA upstream 17389 6794553 ~ 6811294 (+) False LOC110507732
XM_021588006.2 mRNA upstream 52203 6774977 ~ 6776480 (+) False LOC110507774
XM_036967174.1 mRNA upstream 55619 6756311 ~ 6773064 (+) False LOC110507743
XM_036967219.1 mRNA downstream 8200 6937600 ~ 6947976 (+) False LOC110520781
XM_021588758.2 mRNA downstream 50095 6979495 ~ 6987767 (+) False LOC110508323
XR_005040328.1 mRNA downstream 50095 6979495 ~ 6987767 (+) False LOC110508323
XM_021588767.2 mRNA downstream 52092 6981492 ~ 6987767 (+) False LOC110508323
XM_021588780.2 mRNA downstream 63667 6993067 ~ 6996424 (+) True them4
TU249730 other upstream 21013 6794560 ~ 6807670 (+) True LOC110507732
TU249685 other upstream 109520 6717628 ~ 6719163 (+) True G218971
TU249650 other upstream 197082 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 221674 6605322 ~ 6607009 (+) True LOC110520771
TU249525 other upstream 373481 6450338 ~ 6455202 (+) True G218842
TU251120 other downstream 9200 6938600 ~ 6944979 (+) True LOC110520781
TU251106 other downstream 49731 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other downstream 50092 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other downstream 50159 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other downstream 52169 6981569 ~ 6986522 (+) False LOC110508323

Expression Profile