RNA id: TU251053


Basic Information

Item Value
RNA id TU251053
length 603
lncRNA type read_through
GC content 0.33
exon number 3
gene id LOC118945258
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6862876 ~ 6869053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactcttatccagagctacttaGTTAGTGCAtccatcttcagatagctaggtggaacaaccacacatctcagtcatagtaagtacatttttcctgaAAGTAGTTATCAGCAAAATCAGAGTTAGTAAGGGGGGAATCAAGTGCAAGTGTTGGTTCTGGAAcggtctaatctacatggtgtcaatgttacatgacaggtctaatctacatggtgttgatgttacatgacaggtctaatctacatggtgtcaatgttacatgacaggtctaatctacatggtgtcaatgttacatgacaggtctaatctccatgacaggtctaatctacatggtgtcaatgttacatgacagatctaatctacatggtgtcaatgttacatgacagatctaatctacatggtgtcaatgttacatgacaggtctaatctacatggtgtcaatgttacatgacagATCTAATctacatgacaggtctaatctacatggtgttgatgttacatgacaggtctaatctacatggtgtcaatgttacatgacaggtctaatctacatgacagatctaatctacatggtgtcaatgttaaatgacaggtctaatctacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251052 lncRNA downstream 99 6862876 ~ 6866805 (-) False LOC118945258
TU251051 lncRNA downstream 921 6862876 ~ 6865983 (-) False LOC118945258
TU251035 lncRNA downstream 24772 6840522 ~ 6842132 (-) True G220074
TU251022 lncRNA downstream 41691 6824975 ~ 6825213 (-) True G220064
TU251021 lncRNA downstream 42687 6823909 ~ 6824217 (-) True G220063
TU251096 lncRNA upstream 64008 6932984 ~ 6933221 (-) True G220116
TU251200 lncRNA upstream 71124 6940100 ~ 6940522 (-) True G220194
TU251207 lncRNA upstream 82546 6951522 ~ 6951988 (-) True G220201
TU251215 lncRNA upstream 90547 6959523 ~ 6982097 (-) True G220208
TU251242 lncRNA upstream 118393 6987369 ~ 6988252 (-) True G220218
XM_036967177.1 mRNA downstream 72626 6776481 ~ 6794278 (-) True LOC110507764
XM_036967179.1 mRNA downstream 72628 6776481 ~ 6794276 (-) False LOC110507764
XM_036967167.1 mRNA downstream 122231 6714243 ~ 6744673 (-) True LOC110507788
XM_036967169.1 mRNA downstream 122270 6714243 ~ 6744634 (-) False LOC110507788
XM_021588712.2 mRNA upstream 32502 6901478 ~ 6905095 (-) False LOC110508277
XM_021588703.2 mRNA upstream 32502 6901478 ~ 6905283 (-) False LOC110508277
XM_021588708.2 mRNA upstream 32502 6901478 ~ 6905286 (-) True LOC110508277
XM_021588722.2 mRNA upstream 60481 6929457 ~ 6932661 (-) False LOC110508304
XM_036975429.1 mRNA upstream 79469 6948445 ~ 6952369 (-) False LOC118964351
TU250797 other downstream 375889 6486500 ~ 6491015 (-) True LOC110507902
TU250699 other downstream 525291 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other downstream 528091 6332968 ~ 6338813 (-) True G219820
TU250494 other downstream 1114810 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 1118190 5748158 ~ 5748714 (-) True G219591
TU251084 other upstream 61015 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 61015 6929991 ~ 6932356 (-) False LOC110508304
TU251088 other upstream 61015 6929991 ~ 6931881 (-) False LOC110508304
TU251092 other upstream 61015 6929991 ~ 6932356 (-) True LOC110508304
TU251203 other upstream 79822 6948798 ~ 6950956 (-) True LOC118964351

Expression Profile