RNA id: XM_021588712.2


Basic Information

Item Value
RNA id XM_021588712.2
length 2799
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110508277
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6901478 ~ 6905286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTCTGTGAGCTCTAGCGTTTAGCTAGCTAGTCCCATCTTTTCGACAATCCAGGGCGCAACAGGTttctagttaacgttagctgatGCTAActtattattagctagctagtcagCTGGTTAATGATTGCTAACTTGTATTAACATTGTTTGAACAACTGCATGTAGGAGATATCACAGCTAAATTACATATCCACAACTTCACAAGCATACGGGGAGAACAACTAAAAACAGGAAGTCCTGTTGACATCACCTCCTGTCTGCGGCGGCTATGTCGTGCCGGGACATCCACGCCACCAATGCCTTCTCCTTCATCATCGCCTTCATCTCCGTGGGCGGTATCGCTGTGGCGGCGCTGATCCCACAGTGGCGAGTGACACGGCTTGTCACCTTCAACAAAAACGCCAAGAACATCAGCGTCTATGATGGCCTGTGGGCCAAGTGTGTGAAACAAGATGGCTACTctggctgctactactacgactcAGAGTGGTATTCTAAAGTGGACCAGTTGGACCTGAGACTGCTCCAGTTCTGCCTGCCGACTGGGCTACTGTTTGGCTCCCTGGCCCTGGTGCTGTGTATGGCAGGCATGTCTAAGACCTGCTGCTGCTCTGATAAGGCTGAGACAGACATCAAGAGTACCCGCTGTCTGGTCAACAGCGCAGGCTGCCACCTAGTGGCCGGGATGTTCCTGTTCCTGGGCGGTGCTATCGCCCTGGCGCCTTCCGTGTGGTTCCTCTTCCGGACCAAAGAGATGAACATCAAGTACGACCGCATCTTCTCAGACGGGTTCGCGGTCTACGTGGCCATCGGCTGTTCCGGTGGCCTCATGCTCGCCGCCCTGCTGATGTTCATGTGGTACTGCATGTGTAAGAAGCTACCCTCTCCCTTCTGGCTGCCTCTCCCCACACTCCCTAACTCCCTCTCCACCCAGCCCCTCACAGCCAACGGGTACCCCCCCTCCCCTGTCTACGGACCCCCTCAGACCTTCCCTCCACAGGGGTACGTCCCCACTGTGATGGGTGCCCAGCCCTACGCTCCCTCCCAGGGCTACCCTCAGAGCGTAGCTCCactggcccagcagcctcagcAGGTCTGTATGTCCCAGATGTCAGCCCCGGATGGGTATGGGTCAGCTTACAGCTATGCCCCGTCCCAGAGTTATGCCCCCTCTCAGGTGGGCTACGCCCCCAGCTACGTAGGCCACCGCTACTCCACACGCTCACGCATGTCTGGCATAGAGATAGACATCCCTGTTCTAACACAAGacctctgagggagggagggctgctgCAAGAACACTGAGTCCTGGTTCCATTTAGCTGTCCTGTCTCCTGTAAAGGGTGTGTACTGTCAGTGAAGGATATGACTGTTGGTCAGTCTGCACTAGAAATACAACTGTGCGTCACTCAACCAAGCACTGCACTGTTAGACACAGTTTAGTATGCAGGCTCCACATCTGGTGAAAGGACACCAGAGATGCCCCATAATGAAGTCTGAATTCACTGTTACATTTTGATTGAAAACAATATTTTCTAATCACACCGATTTGTACATCTCTTCTTAATGTAAATCTGCTTGAAACCTCATAGCATTTCTACACTGTATAGTTCACTAATATTTCAAAATGAACTAAACTGTAGTCTAACTGTGAGGTAACTTGATGTAGTGAGGTAAAAGGGAGTGACACTAACAGACTGTGATGTCTTTGTtgtgcctgttgttttaatgtgtGTTGTTCATATTGTTGGTCTGTGAAGAAATGTTAATATAATATGCTGTAACATGTGAGATGACATGGGAATGTCCTAATGACTCATCCTATTTACCCATCAACAGTACAGCAGTGGCTCTAAGGACATGACTTTTTATATGTACACATTAATTAGATCATTTTGTATCTAATTCACATATCATGATGCCACCgaatatcaatcaaatgtataaagccctttttacattggcagatgtcacaaagtgcaatATCATCATGAATGTAGTTGTTGACCTGTCTCCTTTGTTAAGGTGCCTGGGAGATATGATTGAACCAGAACACATACTGCTCCTCTGTGACTGTCTGCTACTCAGACCAAAGGAACGTCAAAATGAACATCTTATTTTAGCTCCGGAACACTGCCATTGTCGCCTGTCCTTTTTGTCAAATTGTATGTCTACACTGAGCTGTGTAAGCAAACGTAGAGCTACTCTTGTTTCCACTTCATTCATCCACtactgggctcctgagtggcacagcatctcagtgctagaggtgtcactacagaccctggttcgattccaggctgtatctccatgtttgggagtcccatagggcggtgcacaattggcccagcattttccggggtaggccgtcattgtaaataagaatgtgttcttaactgacttgactagttaaataaaaagttaaACTGTCATTGATTTCAcatgaaggggaggggggggggggggggggttcactacACTGTAACATCACATTCCATTGGATGTGCTGGTTCTAAAATGGTTATAGCTCGACTGAATGCACTGGGCCTCTTATGATTTTACAATCTAGAGAAGGGATTCTGTGATTTATGTTGCATTCTATCCCTAAACACTAGTTTTGACCAAACTTTCCTCTAACTCGTGTGTTGACTTAATCTTAAATACCCTTTGTATCAGCCGTAACGTATCTGACATGCTCTCTCTGTTGCAGTGCTGCATGTACAGTCTGTTCTTATCTCTATGGAAAATGTCTTTGTTCACCAGACCTTTTTCTCAATAAAAATTGTATCTAATTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251050 lncRNA downstream 32502 6862876 ~ 6868976 (-) False LOC118945258
TU251055 lncRNA downstream 32502 6864056 ~ 6868976 (-) False LOC118945258
TU251053 lncRNA downstream 32502 6866904 ~ 6868976 (-) True LOC118945258
TU251052 lncRNA downstream 34673 6862876 ~ 6866805 (-) False LOC118945258
TU251051 lncRNA downstream 35495 6862876 ~ 6865983 (-) False LOC118945258
TU251096 lncRNA upstream 27889 6932984 ~ 6933221 (-) True G220116
TU251200 lncRNA upstream 35005 6940100 ~ 6940522 (-) True G220194
TU251207 lncRNA upstream 46427 6951522 ~ 6951988 (-) True G220201
TU251215 lncRNA upstream 54428 6959523 ~ 6982097 (-) True G220208
TU251242 lncRNA upstream 82274 6987369 ~ 6988252 (-) True G220218
XR_005040324.1 mRNA downstream 32425 6866025 ~ 6869053 (-) False LOC118945258
XR_005040325.1 mRNA downstream 32425 6866025 ~ 6869053 (-) False LOC118945258
XM_036967177.1 mRNA downstream 107200 6776481 ~ 6794278 (-) True LOC110507764
XM_036967179.1 mRNA downstream 107202 6776481 ~ 6794276 (-) False LOC110507764
XM_036967167.1 mRNA downstream 156805 6714243 ~ 6744673 (-) True LOC110507788
XM_021588722.2 mRNA upstream 24362 6929457 ~ 6932661 (-) False LOC110508304
XM_036975429.1 mRNA upstream 43350 6948445 ~ 6952369 (-) False LOC118964351
XM_036964028.1 mRNA upstream 48061 6953156 ~ 6953874 (-) True LOC118944481
XM_036967226.1 mRNA upstream 71068 6976163 ~ 6979189 (-) True zgc:174935
XR_002471278.2 mRNA upstream 83803 6988898 ~ 6992999 (-) False LOC110508339
TU250797 other downstream 410463 6486500 ~ 6491015 (-) True LOC110507902
TU250699 other downstream 559865 6329602 ~ 6341613 (-) True LOC110534138
TU250746 other downstream 562665 6332968 ~ 6338813 (-) True G219820
TU250494 other downstream 1149384 5751724 ~ 5752094 (-) True G219592
TU250493 other downstream 1152764 5748158 ~ 5748714 (-) True G219591
TU251084 other upstream 24896 6929991 ~ 6931881 (-) False LOC110508304
TU251087 other upstream 24896 6929991 ~ 6932356 (-) False LOC110508304
TU251088 other upstream 24896 6929991 ~ 6931881 (-) False LOC110508304
TU251092 other upstream 24896 6929991 ~ 6932356 (-) True LOC110508304
TU251203 other upstream 43703 6948798 ~ 6950956 (-) True LOC118964351

Expression Profile