RNA id: XM_036967219.1


Basic Information

Item Value
RNA id XM_036967219.1
length 4749
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110520781
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6937600 ~ 6947976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcgatattgcaacctttcggttactagtccaacactctaaccactatgctacctgccgccccaatatggTTGTCTGGGCCCATATATGGATTTCCTGTCGCGTTCCAATATGAACGTTGACTACAATATAGCGTCATCAAATTGAAACATTTTAGTTCCCTCGTCAGGTTCTTGAACCAGAAGAAGCAGCGCAATGGTCTGAGCGCTCTTTGCCGAGACTACGACTCTGTGCTCGCGCCCTATACCGCCCTACCGGTGCAGCGCGACTGAACGAGTTTCGATGTGACGCTGAAGTCaagtcagagaggaagaagagagatgcCCAGCTCTGCGGAAAATCTGTCACCCTCACCAGCTGGCGATTTTTCCTTGTTTCGCCTACAAAGCATTACGTTTTTGTATGGCGGTCAATGAGAGTGTCAGATTTTGTCAACTTAATGAATAGCTAATTTGCTACaggtttatttgatcgaatataaGTTTCGTAATGCTTAAGTTCTTACGTGTACAATTTAAGTAGGACAATTTTGTATGATGCCTTTTTATATTGTACAATGGCTATTTTTCCACCCTTACCATCCTACAGTAGGTGTCGGCATGCACATCTAACGCTTGTTTGCGGACCGTCATAAtaccgaagaagaagaagaagaagaagaagaagaagaagaaagatagGCGGGAGCTTTGTGGACAACGAGTCCAATTTTAGGGCGCAGAGACGtgtatcttgtcagtatatccatagTCTTTGGTCAAACACAGAAACCGGGTTCTCTCTCTTGAAATAAGGACATCTGTCCTTGAGGTGGATAGATACAAGTATCGGGTGACATTAGTAGCATATTCGGGATTGGATGCTGTCATTAATGGTTAAAACACATCTCATCAGACAGTGTCTGTTCActgcgaagagagagagagagagagcgaaagtgagagtgagtgagggaggtgGTATGTGTGTCATCTCATGAGCTCGATAGAGCCTCCCACCGGCGACTGCATATATACAGTGAGAGCGGCGGCCGTCGGCCGTACAGAGGAGCGATTGGGAGATATAGAGATACATCGTACGGAGtgtgccGGCTCTGGCCCTGGCTACAGCCATGCCTCTTCTGGAAGAGACCACTGTGCCTCGAGAGCATCCCCCCACACTGCCTGTGGTCATCATAGGTAACGGGCCATCAGGTATCTGCCTGTCCTACCTGCTGAGTGGCTACAAGCCCTACCTGGACCCTTCAGCTGTTCACCCAAACCCTGTTCTGTACAGGAAGTTACAGGAGACCAGACACCTGCCCATCACTGAACAGGATCTGGAGTATCTGAGTGAAGGTCTGGAGGGGCGGTCAGGAAACCCTGTAGCGGTGCTGTTTGACACCCTGCTGCACCCCAATGCGGATTTTGGCTACGAGTTTCCCCCTGTGCTACAGTGGAGAAGAGACAAGCAGCAGCACCTCCCTCACCTGGTGCTGGGCAGGGCAACGCCTGGAGGGGCCTGGCACgTGATGGAGGGCTCCATGCTGACCATCAGTCTGGGCATCTGGATGGAACTGCCAGGGATCAACTACCGAGACCTGACTAACAATGGCAAATGCAGGGGCGTGACCAACAACCGGGCCACTCCAGAGGAGATCTCGTCTTACTACCGTAACTACGTCAAGCTAATGGGCCTGAAGCAGAACTTTGTTGACAACACCTACGTGACCTCTGTGCAGAAACTTTTCCGTGGACCCGAGGGGGAGGGTCTAGAGAATGGCCAAGGAGGGTTGGGGGTGGGGGGAAAGGGGGTGTacgaggggagggagggtgaaggTGTAGACGAAGGGGGAGGTGGGGGCCTGTGGGAGGTGAGGGGGTACCAGCGGGTGCAGGGCGACACCCACGTTCCCTTCTGCCTGTTTTCGGAGAATGTAGTTCTGGCCACGGGCGCGTCTGATTCGCCAGCTCAGCtgggtgtggagggggaggagctTCCCTTCGTGTTCCACAGCATCTCTGCCCTGGGATTGGCTGTGAGCCGGAAGAAGCTTGGGCCAAACTCTGATCCGGTGCTGATTGTGGGGGCGGGGTTAAGCGCGGCGGATGCGGTTTTGTGCGCTTGTAACAACAACATTTCCGTGCTGCATGCCTTCCGCAAACACGTAGACGACCCAGGCCTCATCTTTAAACAGCTACCCAAGACCCTCTACCCAGAATACCACAAGGTCTACCACATGATGCACTCCCAGACCCACACAACACCAAACATGGCTGCCACCTCCACCACCAATGGCCTTCCCAGCATGGCCGCCTCAGTCTGCTCCAAGATGTGCTCCAAGCCCCAACCCACCACAAATAACATGGCCGCCagtggtggtcccgttctgttcCCTGACTACACCAGCTTCCCAGAGCACTGTGTGGTGTCCTTCCAGCCAGACATGAAGTGTGTCCTGCAGGGGAGCAACTCCCTCAAGGCCTTTAAGATCTCCATGGCCCTGGTGTTGATCGGCACCCATCCCAACCTGTTCTTCCTCAAGGGCCAGGGCCAGTACCTGGGACTGGACCCCACCAAACCCATCTCCTGCAAGCAGAACCCTGTGGATGTGCACCCCTACACCTTCGAGTGCACCAAGGACCCAGGACTGTTCGCCATGGGCCCGCTGGTGGGAGACAACTTTGTTCGCTTCCTAAAGGGCGGTGCTCTAGGCATTGCCTCCTGCCTGCTCAAGAGACTGAAGAAGAAAGGCAAGCTGATCGCAGAAgggggaggagtaggaggaggagagttTATCTAGGTGAAGTGTGGATAGAGAGGCACGAGGTGGTGAATGAGTtggaagcgagagaaagagaggaggaagaggcatcTTTATTTAAGtgaagggagaaaggagaggaaggaggtggagaaagggaggagaggaaggaggaagaggagggggttcaTCTTAGTAAAAATAGCTACTATAACCAATGGAGTTCTGAGTTAAAAGGGCAAAGCCAAACAGTACGTTTTTTAATATTTTATTGTTTGCAGTGGACATGCCTATTTGAACTCTGAAGCTTTCTTACCACTTCTGAGAGAACTGAAAACAATGGAAGTGGAGGCAGGCTAGTTACAGTTCATGACCAGGTTCAGCCCACCATCCGTTACAGCTCCACTGTTCTGGTTTCTGCTGGGAAGCTGTCACAGGGTTTAATGTCCTCTATCCAGAAATCCAATCTGCAGTGTGACAATGTTTTTTAAGTCATATTTCTGACATTTTGTAATGGTATTAGTTTTTGTTATTTGCTCACCTTGTCTTTCATGCAAGTGCATTTTTTGATTTCTCATCTACTTTAAACAATTGTTCTACTATTTCTCTGATGGCCTTCACCACACAATGGACTGTGAACCACTACAACTCCCCTTTAAAGCTTCAAGGAAATGGAACTTTGTAGAGATAGGCCCATAGCTGCTATAGTGTTCCTGCCATCATCTCAATTCTGAGTTTCTCATCAGTGCCAAGCTTCAGACCCCAAGTAGTATCTGGCAGACCAGGATGTAAGGGGAACGTTGAAGTAACagatgaataacagattcatCAAAAACCCCATCACCATCCTAATCAGACGAAGTAGAACTAACTCACTATGGTTGGAGCGCTCCACTTAACGCTTTTCCTACGCAAACCCTTCCACTCACACACCTGACCTGAATGTATTCTGGATCAGATAACTCATTGCTAACTTACTGTACATGTCAGCCTGATTTCAAACAATGGGACATAAGAGTTCTCTATTGATGTTAGACCATAACAAAATGCCAAATAGTGTTTTTTAGACACACTGAAGTCATGCAGATGCGCGTGACTCTCGGCTGCAGTAAGAAATCCATCGCCATCTGCATCCATCCAACATAGCGTAGATTTACGATATTACTCACAACAAAATCACTTTTTGGAGTCTCATATGCTTACCGTGATGTTTTGATTCTAGCTGGAACAGTCGCTAAGACTATATCTGGTTGTGATCTTtgaaaaataactattttggatgcagcagttgttagctagaatgctaacgctcATTGACATAGGCTGTAGCAAAAGCTAGTCAAATagccattttactggttgaagttgaAGTGTTTTTTAAGAATAATGCAGTTGATTTGGGGTAACACAAACgttatattaagcaggacattcatacgagctttaaaatccaattataatccaaaagtagtgtgaaatgcactcataagtAACATCTAAATATAGGCTTTTTTGCTGCCACCAATTTGCAGCAATGTTAACACAGAAAGGGGTCTATAAACTACTACTAGTCGACGACTCCTGATAAGTGTACATTGGATAAACGCAAACTGTAGGTGCATTCTTTGACGTCCATCAGTCTGAATACAAAACTGCTAGTCCATTGCATTTATCAGGAGTCGACTATCGCCTATTGAAGTCATAATGACTGTTAAATGCACATTTTCTGGTTGCCATTATGGAGTAAATATTATGCCTGTGGCTCTGATTCCAGGTCCGTATAGTATTCTCTGTGACATTTCTCATACCATGTCACTTTCACACAGCCATCATACGCCTCATGTGTTTGTTGTGCCAAATACCTGTTACTGTATGTAAAGCTGTGAGGACTGAGGGTGGAGTTTCATTCATTTATTGAACCAGTCAGTCGCCTTTAGAATGTGTTTATTCATATGCAGTTTATTTCCGCATGCAGTCATCCTCAAGACTGAAGCTGCTTGCAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249802 lncRNA upstream 8200 6921101 ~ 6929400 (+) True LOC110508266
TU249856 lncRNA upstream 71949 6862939 ~ 6865651 (+) True G219063
TU249744 lncRNA upstream 121021 6816286 ~ 6816579 (+) True G219026
TU249735 lncRNA upstream 135668 6798368 ~ 6801932 (+) True G219018
TU249734 lncRNA upstream 135802 6797874 ~ 6801798 (+) True G219017
TU251128 lncRNA downstream 6173 6954149 ~ 6954739 (+) False G220134
TU251129 lncRNA downstream 6173 6954149 ~ 6954739 (+) False G220134
TU251130 lncRNA downstream 6173 6954149 ~ 6954739 (+) False G220134
TU251131 lncRNA downstream 6173 6954149 ~ 6954739 (+) False G220134
TU251132 lncRNA downstream 6173 6954149 ~ 6954739 (+) True G220134
XM_036967182.1 mRNA upstream 8200 6828683 ~ 6929400 (+) False LOC110508266
XR_005040321.1 mRNA upstream 8200 6828683 ~ 6929400 (+) False LOC110508266
XR_005040322.1 mRNA upstream 8200 6828683 ~ 6929400 (+) False LOC110508266
XM_036967187.1 mRNA upstream 8200 6828689 ~ 6929400 (+) False LOC110508266
XM_021587946.2 mRNA upstream 126306 6794547 ~ 6811294 (+) False LOC110507732
XM_021588758.2 mRNA downstream 31519 6979495 ~ 6987767 (+) False LOC110508323
XR_005040328.1 mRNA downstream 31519 6979495 ~ 6987767 (+) False LOC110508323
XM_021588767.2 mRNA downstream 33516 6981492 ~ 6987767 (+) False LOC110508323
XM_021588780.2 mRNA downstream 45091 6993067 ~ 6996424 (+) True them4
XM_036967264.1 mRNA downstream 68715 7016691 ~ 7045216 (+) False LOC110520784
TU249730 other upstream 129930 6794560 ~ 6807670 (+) True LOC110507732
TU249685 other upstream 218437 6717628 ~ 6719163 (+) True G218971
TU249650 other upstream 305999 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 330591 6605322 ~ 6607009 (+) True LOC110520771
TU249525 other upstream 482398 6450338 ~ 6455202 (+) True G218842
TU251106 other downstream 31155 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other downstream 31516 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other downstream 31583 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other downstream 33593 6981569 ~ 6986522 (+) False LOC110508323
TU251468 other downstream 400316 7348292 ~ 7353630 (+) False LOC110536044

Expression Profile