RNA id: TU251203



Basic Information


Item Value
RNA id TU251203
length 329
RNA type TUCP
GC content 0.37
exon number 4
gene id LOC118964351
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6948445 ~ 6952369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGAGTTCAAATCCCTCACCGTGGCAACACCGGCAAGACCTAAACCACGCCCTATGGAGACGCACGGCAATGTCAACAGGAAGGACTTTAAACGCTTCCGCAAGgtcccAGTTCCCGGTGCCCAGGGTTTGCCCAACATCATCGGCGGGTCAGACCTGTTGGCCCACAACCGAGGCAAGAACTCTGAGCTGGAGGAGTGGCTGAGAGACGCAGCAGAGgatgAGCGTCAGAACAAGAAAGAGGAGACTTTGGGAGATGACCTCTTCAGgtACAACCCCAAACCCACCAAGAAAAGATGAGAGCACCTGGTTGTAACATGTGAAGCCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251200 lncRNA downstream 8276 6940100 ~ 6940522 (-) True G220194
TU251096 lncRNA downstream 15577 6932984 ~ 6933221 (-) True G220116
TU251050 lncRNA downstream 79822 6862876 ~ 6868976 (-) False LOC118945258
TU251207 lncRNA upstream 566 6951522 ~ 6951988 (-) True G220201
TU251215 lncRNA upstream 8567 6959523 ~ 6982097 (-) True G220208
TU251242 lncRNA upstream 36413 6987369 ~ 6988252 (-) True G220218
TU251241 lncRNA upstream 37371 6988327 ~ 6988873 (-) True G220217
TU251246 lncRNA upstream 49476 7000432 ~ 7001479 (-) True G220222
XM_021588722.2 mRNA downstream 16137 6929457 ~ 6932661 (-) False LOC110508304
XM_021588708.2 mRNA downstream 43512 6901478 ~ 6905286 (-) True LOC110508277
XM_021588703.2 mRNA downstream 43515 6901478 ~ 6905283 (-) False LOC110508277
XM_021588712.2 mRNA downstream 43703 6901478 ~ 6905095 (-) False LOC110508277
XR_005040324.1 mRNA downstream 79745 6866025 ~ 6869053 (-) False LOC118945258
XM_036964028.1 mRNA upstream 2200 6953156 ~ 6953874 (-) True LOC118944481
XM_036967226.1 mRNA upstream 25207 6976163 ~ 6979189 (-) True zgc:174935
XR_002471278.2 mRNA upstream 37942 6988898 ~ 6992999 (-) False LOC110508339
XM_021588793.2 mRNA upstream 37942 6988898 ~ 6993841 (-) False LOC110508339
XR_002471280.2 mRNA upstream 37942 6988898 ~ 6993845 (-) False LOC110508339
TU251087 other downstream 16442 6929991 ~ 6932356 (-) False LOC110508304
TU251092 other downstream 16442 6929991 ~ 6932356 (-) True LOC110508304
TU251084 other downstream 16917 6929991 ~ 6931881 (-) False LOC110508304
TU251088 other downstream 16917 6929991 ~ 6931881 (-) False LOC110508304
TU250797 other downstream 457783 6486500 ~ 6491015 (-) True LOC110507902
TU251208 other upstream 1603 6952559 ~ 6952963 (-) True G220202
TU251218 other upstream 16125 6967081 ~ 6970500 (-) False G220209
TU251220 other upstream 16125 6967081 ~ 6970500 (-) False G220209
TU251222 other upstream 16125 6967081 ~ 6970500 (-) True G220209
TU251236 other upstream 38026 6988982 ~ 6993806 (-) False LOC110508339

Expression Profile