RNA id: XR_005040328.1


Basic Information

Item Value
RNA id XR_005040328.1
length 1018
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110508323
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6979131 ~ 6988449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttaggGTATGGACGTCCCAAGGCTCCCAGATAGCACTAGCAAACCTGGCACTGCTACGCGGAAGTAAATGGATGAATGCAAAATAGTCATCAGCACTCCGGAATTCAAGGGAATATAAACGTAAAAAGTATGCGGGCTGTGTCTGCGCTAGTGTTTCTGGCCGTGggtgtgatggtggtgttgatgtacCAGGCGGTCCGCCAGGAGCTGACTCTGCAGGGTCTTAAAGCCCGCGCTCTGGAGAGCTCCTCTCAGGTCAAGCAGAAGGAGAACGACATCGTCCAGGTCAAGATGAAGATCCAGAAGCTGAATGGTGAGCTGGAGCCCATCAACACCAAGAGAGAGGAGCTGACTAAGAAGAAGGAGCAGTCTGCTAAAGCCACAGGCGAGGCGGACAAGAGTCTAAAGACCTGTCATACAGAGAAGGCCGATGCAGAGAAAAAGAAGACTGACGCGTCGGCGGCTCTTCAGAAAGTTAAAGATGATCAAGAAGCACAGAAGAAGAAAGCTCAGGAGGAGATCCAGGCGTTGAAACAGCAGATTCTGGAGCGGGACAAGGCACTGTGTGCCTTTGTGGACCAGACCAATGAGGAAGGACGGAAGCTGTGTGGAATCACAGAGGCCCCAAAATGAAGACTTGGAATAGACTATcagcctccatctctccctccctccctcatgcttGCCGTgatgcacacacacccatacacatcaTCGTTGTGCAGCTCATAACATTCCCCACCTACAACCACCTTCACTTCACTGTACCTCTCAATACTCaggaaaataaaaaacaagaaggGTTTGGAAAACCCAGTCTGAATGTCATGtcttcattacatacagtacactgtTAGTTTGTGTATGCAGGACATTAATGTAGGAATGACTGAAAGAGGTTAGGGCTAATTCCCTCAGAGATGGAGCAAGGTGTCTCTGAGGTGACTTCTGAATGTTGCAAAGGTTCTAGAGAAGAGTTCTAAAGAAGTGTGAAGGTGCATGCCCATCTGGTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251116 lncRNA upstream 2028 6977004 ~ 6977467 (+) False G220125
TU251117 lncRNA upstream 2028 6977004 ~ 6977467 (+) False G220125
TU251118 lncRNA upstream 2028 6977004 ~ 6977467 (+) False G220125
TU251119 lncRNA upstream 2028 6977004 ~ 6977467 (+) True G220125
TU251132 lncRNA upstream 24756 6954149 ~ 6954739 (+) True G220134
TU251163 lncRNA downstream 53249 7041016 ~ 7044360 (+) True LOC110520784
TU251182 lncRNA downstream 91913 7079680 ~ 7079902 (+) True G220178
TU251189 lncRNA downstream 114531 7102298 ~ 7103268 (+) True G220184
TU251190 lncRNA downstream 115988 7103755 ~ 7103963 (+) True G220185
TU251191 lncRNA downstream 116921 7104688 ~ 7104965 (+) True G220186
XM_036967219.1 mRNA upstream 31519 6937600 ~ 6947976 (+) False LOC110520781
XM_036967182.1 mRNA upstream 50095 6828683 ~ 6929400 (+) False LOC110508266
XM_021588780.2 mRNA downstream 5300 6993067 ~ 6996424 (+) True them4
XM_036967264.1 mRNA downstream 28924 7016691 ~ 7045216 (+) False LOC110520784
XM_036967256.1 mRNA downstream 28926 7016693 ~ 7045216 (+) False LOC110520784
XM_036967271.1 mRNA downstream 33788 7021555 ~ 7045216 (+) False LOC110520784
XM_036967289.1 mRNA downstream 58968 7046735 ~ 7060355 (+) False LOC100135938
TU251120 other upstream 34516 6938600 ~ 6944979 (+) True LOC110520781
TU249730 other upstream 171825 6794560 ~ 6807670 (+) True LOC110507732
TU249685 other upstream 260332 6717628 ~ 6719163 (+) True G218971
TU249650 other upstream 347894 6624584 ~ 6631601 (+) True LOC110507851
TU249596 other upstream 372486 6605322 ~ 6607009 (+) True LOC110520771
TU251468 other downstream 360525 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 371901 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 375531 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 375531 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 375531 7363298 ~ 7365285 (+) True G220435

Expression Profile