RNA id: TU251237



Basic Information


Item Value
RNA id TU251237
length 1146
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC110508339
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6988898 ~ 6993845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGATAGAGGACCAGGGAAGCTGGAGAGTTCCTCTTGGAGTCATTTGACTGATGTTGGTGTTGAAATTTCCCTTTGAGATTTCACGTCCCATTATTTGGCATAGTCCCCTGGCAATCTGCTGCACTCCTCCTGTTCGTATCATGATGACAATGCTGGGGTAAGATTGCCAAGCCCTATTCTGATGTAACTACAAGTAAATTAGCTAATGtaacctagctaacgttatctactGTAACGTTACGGTTACTACTAGTTAGTCCTTTAGCTTTACTGACTAATGGCTGAGGTATGATAGCAATACACATTCAGAATCAAACCTAACATCGCACTATAACGTTCTACTGTAACAAACTAACAACAGGAAGATAAATACGGAGCTTTTGTCAATTTTGTCTCGCCTCTGGTTTTTGCCGGTAGAATGACTTTCATGTGTATCTAACCGCCCCATGTAACCACTTCCTGCACAAGGAACGGCGACGGGCAACACGCGTCATGCTGGTCATGTGATCTGTATCGTTCAATGTAATTGGCAGCGAAGGAAGGATATTTCCGGCTACataggttagttaccatgccAACGTAGACAGACTCGCCTCCATCCTTTGAGACGCTGACATGTTTTTAACCATTTATTCGTTTATTGTGCAGTCTTTGATAAAGCAAGATACTGGTGACTATTTACTTCAAATAAACTGCCAGCAGGATGTTTGGTTGTGAGGAACGACGTTCCAAAAACAAACTTGTGCAGAGGACGAGAGACAGAATCAAGtaTCTGTGGTGAAATGCAAAATGCTGAGTTTGAGGGCTCCACCCAGGCTGGTTCCATGAGGACCCTGAAGCTGAGAGAACTGacccagcagagagagactgagctgGGAAAGACTGCTCTGACGATGgtccGTAGAGCAGCACTGCAGGCCCTCCTGGAGCATGAGAGACAGCAGTACGTCATAGAGCTCAACAGACTGGGCAAGACCATCTACAAACAGAGAGTCTAGACTCTAGTCCCTACTAGACCCATAACAACACCAAAGACCATCTGAAGTTTATGCTGAAAGCCATCTAGCAGCTAGGATGTGTGAACAAATATAGAATACTTTGAAGTATTAATGTGAAAACATTTACTCACAGCCATCTACAAGCACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251241 lncRNA downstream 109 6988327 ~ 6988873 (-) True G220217
TU251242 lncRNA downstream 730 6987369 ~ 6988252 (-) True G220218
TU251215 lncRNA downstream 6885 6959523 ~ 6982097 (-) True G220208
TU251207 lncRNA downstream 36994 6951522 ~ 6951988 (-) True G220201
TU251200 lncRNA downstream 48460 6940100 ~ 6940522 (-) True G220194
TU251246 lncRNA upstream 6912 7000432 ~ 7001479 (-) True G220222
TU251251 lncRNA upstream 22975 7016495 ~ 7016709 (-) True G220226
TU251256 lncRNA upstream 26456 7019976 ~ 7061831 (-) False G220229
TU251265 lncRNA upstream 26456 7019976 ~ 7061831 (-) False G220229
TU251268 lncRNA upstream 53173 7046693 ~ 7061831 (-) True G220229
XM_036967226.1 mRNA downstream 9793 6976163 ~ 6979189 (-) True zgc:174935
XM_036964028.1 mRNA downstream 35108 6953156 ~ 6953874 (-) True LOC118944481
XM_036975429.1 mRNA downstream 36613 6948445 ~ 6952369 (-) False LOC118964351
XM_021588722.2 mRNA downstream 56321 6929457 ~ 6932661 (-) False LOC110508304
XM_021588708.2 mRNA downstream 83696 6901478 ~ 6905286 (-) True LOC110508277
NM_001281406.1 mRNA upstream 214401 7207921 ~ 7218834 (-) False il6r
XM_036963716.1 mRNA upstream 214401 7207921 ~ 7220075 (-) False il6r
XM_036963718.1 mRNA upstream 214401 7207921 ~ 7220078 (-) False il6r
XM_036963724.1 mRNA upstream 214401 7207921 ~ 7220078 (-) False il6r
XM_036963735.1 mRNA upstream 216174 7209694 ~ 7220080 (-) False il6r
TU251218 other downstream 18482 6967081 ~ 6970500 (-) False G220209
TU251220 other downstream 18482 6967081 ~ 6970500 (-) False G220209
TU251222 other downstream 18482 6967081 ~ 6970500 (-) True G220209
TU251208 other downstream 36019 6952559 ~ 6952963 (-) True G220202
TU251203 other downstream 38026 6948798 ~ 6950956 (-) True LOC118964351
TU251257 other upstream 26456 7019976 ~ 7061831 (-) False G220229
TU251259 other upstream 26456 7019976 ~ 7061831 (-) False G220229
TU251262 other upstream 26456 7019976 ~ 7061831 (-) False G220229
TU251255 other upstream 53173 7046693 ~ 7061831 (-) False G220229
TU251284 other upstream 89225 7082745 ~ 7083691 (-) False G220242

Expression Profile