RNA id: XM_021588780.2


Basic Information

Item Value
RNA id XM_021588780.2
length 2181
RNA type mRNA
GC content 0.45
exon number 6
gene id them4
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 6993067 ~ 6996424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTACATGGGGCGGTTAGATACACATGAAAGTCATTCTACCGGCAAAAACCAGAGGCGAGACAAAATTGACAAAAGCTCCGTATTTATCTTCCTGTTGTTAGTTTGTTACAGTAGAACGTTATAGTGCGATGTTAGGTTTGATTCTGAATGTGTATTGCTATCATACCTCAGCCATTAGTCAGTAAAGCTAAAGGACTAACTAGTAGTAACCGTAACGTTACagtagataacgttagctaggttaCATTAGCTAATTTACTTGTAGTTACATCAGAATAGGGCTTGGCAATCTTACCCCAGCATTGTCATCATGATACGAACAGGAGGAGTGCAGCAGATTGCCAGGGGACTATGCCAAATAATGGGACGTGAAATCTCAAAGGGAAATTTCAACACCAACATCAGTCAAATGACTCCAAGAGGAACTCTCCAGCTTCCCTGGTCCTCTATCAACAGTGTCCGAACCATGGCGGTGTTGCCCTGGCCTTTCTCTTTCCAGCCACGGGACTTCAGCCTGCCCAACTCGTCCTGGGGCTCCGACATGAGGCGTCTGTATGAGCACTATAACAGCCAGTGTGAGGTAGAGACAGATGACGGAGAGAAGAAGTGGGGGGTCTGGAGAAGGCTGCCCAGCTATAACCGCTCCCTCAAGTACGCCACAGGTGGGGTGTATTTGAGTAAGATCATTCAGTCGAAGGCACGTCTGTTCACGCGGAAcatcagggagcagggagcagggttCGAGTACGTTGTGTTTGTCAACAAGCAGgagcagaagtgtgtgtgtgtgttccaggctgGCCACCTACTGGAGGGACCCCCGGGGCACGTCCATGGGGGGGCAATAGCTACCATGATTGACACTGTAACGGGGACCCACGCCACCTACCTCTCTGGGCCTGTCATGACTGCCAACCTCAACATCAACTACCGCAGCCCCATCTCATTGGGTAGTACAGTGCTGCTCACCTGCTCACTGGATAAGAAGGAGGGACGGAAAACCTTTGTTTCCTGTCAAGTGACCAACACGGACAGCTCCAAACTACACACAGAGGCCACAGgGCTGTTTCTGTCAATCACAATGGGACACCTATTAGGAGGATGATGGATAGGCCAGCTCATCGACCAACCAGACGCTACAAACACACAACATCAGAAACAGCACTGACTTCCAAGGGGGTGTGTTTGTCTGCACACAAATGTTTGGGTGTATATCAGTACCTGAGTGTGGGAGTGTGTATGCTTGAGTGTGGGAGTGTGTATGCTTGAGTGTGGGAGTGTGtatgcttgagtgtgtgtgtgtgtgtgtgtgtggttctgacTGCCAGATCCAGTAATCTTCTTAACTCTAGCAGTTTGCCTGAGACACCTGATGCCTTGTGCTCCACTGACATAgtatacagatactgtatatggatattgtacctctctttctccactgttACACACTCCTGGACAACCAGCTCCAGTCAGAGTGAAGCTCATAACCTCTGGTATATTATATTCAGGTCGAGGCTGTGAATACAACTTTTCTGAACCCTTCTTCCCGACAGCTAAAGGTCCCGACACTTCTGCATGTGAAGAATTCTCTACTTTACACACCTCCCTTCACATTTCTCAGTCAATTGTGACTGATAATCTTCATGTTTTACCAGTGAAACGTCCATGCAGCATCTGCATACCTGTGTCTAGTTTCAATCATAGCACATCTTTTGCCTAGTGGCACGTGCTGTTGAGTTTTGGCCACATGAGAGAAAAATGTGCCTATTTGCACAATCATCCTAAAATCTCATAAGAAATGAGGTGGCGTTTTTGTATTACAGTAATTTTATACTACGCTATTATATTGGGTTCTGTTATGTAGAATACCATCATTATGTGATCTGGCAAACATTGATCTAACTTTATTAAACAAGCACCATTCACCTGAGTAGCTTGTTCTCTAGTAGAACAGAGACTGTGTAAAGAAGCTTCGGGACCTTTAGCCGTCGGAATGAGGGGTCTAGAAAAGTTGGATCCACAGCCACTCCGATATATTTCATggatagtttattttttatttatataattCTGAATAATTTATTAGGTCTTTTACAGTTTGAGGTTTGAATCATTGCTGATACGTTATTATGTGACCATTATGACCTCTTGAATAAAGCTTTACCTCTTGGGTACTGTA

Function

GO: NA

KEGG:

id description
K16339 THEM4, CTMP; acyl-coenzyme A thioesterase THEM4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251101 lncRNA upstream 4618 6987361 ~ 6988449 (+) True LOC110508323
TU251116 lncRNA upstream 15600 6977004 ~ 6977467 (+) False G220125
TU251117 lncRNA upstream 15600 6977004 ~ 6977467 (+) False G220125
TU251118 lncRNA upstream 15600 6977004 ~ 6977467 (+) False G220125
TU251119 lncRNA upstream 15600 6977004 ~ 6977467 (+) True G220125
TU251163 lncRNA downstream 44592 7041016 ~ 7044360 (+) True LOC110520784
TU251182 lncRNA downstream 83256 7079680 ~ 7079902 (+) True G220178
TU251189 lncRNA downstream 105874 7102298 ~ 7103268 (+) True G220184
TU251190 lncRNA downstream 107331 7103755 ~ 7103963 (+) True G220185
TU251191 lncRNA downstream 108264 7104688 ~ 7104965 (+) True G220186
XM_021588758.2 mRNA upstream 5300 6979495 ~ 6987767 (+) False LOC110508323
XR_005040328.1 mRNA upstream 5300 6979495 ~ 6987767 (+) False LOC110508323
XM_021588767.2 mRNA upstream 5300 6981492 ~ 6987767 (+) False LOC110508323
XM_036967219.1 mRNA upstream 45091 6937600 ~ 6947976 (+) False LOC110520781
XM_036967182.1 mRNA upstream 63667 6828683 ~ 6929400 (+) False LOC110508266
XM_036967264.1 mRNA downstream 20267 7016691 ~ 7045216 (+) False LOC110520784
XM_036967256.1 mRNA downstream 20269 7016693 ~ 7045216 (+) False LOC110520784
XM_036967271.1 mRNA downstream 25131 7021555 ~ 7045216 (+) False LOC110520784
XM_036967289.1 mRNA downstream 50311 7046735 ~ 7060355 (+) False LOC100135938
XM_021588832.2 mRNA downstream 50311 7046735 ~ 7061832 (+) False LOC100135938
TU251106 other upstream 6545 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 6545 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 6545 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 6545 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 48088 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 351868 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 363244 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 366874 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 366874 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 366874 7363298 ~ 7365285 (+) True G220435

Expression Profile