RNA id: XM_036967271.1


Basic Information

Item Value
RNA id XM_036967271.1
length 4348
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110520784
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7016691 ~ 7045216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggtttctcTGTGGTGCCAACATCAACATTATAGCTCTGTTATGCACCTGTGGTACTTTGTGTAGACATTATTCTCCTGTTTGCTGGATTTAGGTTTGGAGATAAACTCTATATTGGTATTCTGGCATCTGGATGCAGATGGTATCAGATAGCATCTCCTTCACATGTGGTGGTGTTTCTGGGCTGTTTCTGCTCCTGACTACAACACACCTGTTAGTTTTGAGTGTAGGGAGAACATTGAAAAATGTCTGGTTGGTTTTCATGATACTAGTTTTCACTTTGAATAATAATCAGACCGATGATGGGATGTGTATCATCAGAAAGCTCTCTCTTTATTGGCTGTTTCAGATGTCAGTCCATACTCAATTGACTAGTTAGGCTGTCACTCTGTGCTGTGGGTACAGTCCTATCCTCtagacatgtacagtatatgtcctTTCTTGCCAATAAAACTTTTTTTGTGTTTCAATGTATATTTGAGGGAGATAGACTGGTGGGTTCAGAGAGTGGTTAAGGCTTTGAGGGTGACTAGGTGAGGGGGTTACGCACAACAAAGAATGGGAAAAAAGTACcgtatgaaaagagagagagcgaaaggggaAAGGCCCTCTGTCTTTCACACGCACTGTGTGACTGACAGAGCGCTTGAGCAGTGACTAGCGGAGACTTTGAGGCCTAACCATGCTGTAGGCGCACTAAGATAGTCACTCGGCAAGagaaaggacagacagagagagaagagagcagagagagagagagatcaagacaGTGACAGTGACAATTTGACAGTGATTGTGAATTGAGGGTGAGGGTGacaacaagaaagagagagagaaatagagtttGTGAAAGTGGGACAAGAAGACTGAGAAGTGGAGTGAAGACGATGCGAGGAGACACTGTGTCCAAGAAGACTCATTTGACTCAGATTGAGGTGATTCCCTGTAAGATCTGTGGTGATAAATCATCAGGAGTTCACTATGGAGTCATCACCTGCGAGGGCTGCAAGggTTTTTTCCGGCGTAGCCAGCTGCCGTCCGTGTCCTACTCCTGTTCCAGACAGAGTAACTGTCCTATAGACAGAGCCAGCCGCAACCGCTGCCAGAGCTGCCGACTGCAGAAGTGTGTGACCCAGGGCATGAGCCGGGATGCGGTGAAGTTTGGTCGGATGTCGAAACGTCAGCGGGAGTCTCTGCATGCCGAGGTGGAGAGACACCGTCAGCTGCAGCAGCAGCATCTCCAGGCAGAGGCCCAGCCCGCCCTGCCCTACCCCAGCAAGGCATACCGTTTCCGGACACCCCACCTGCTCCAGGCCCCGGCTCCGGCCTACTCCTTCCCTGGAGAGCCAGAGCTGCCACCCTGCCCGACCGATGTGCTCCCCTACCTGGTGTGCTCCCCAGGCGAGTCCCAGGCTCCAAGTCTGGCCTACCAGGGCTCCTGTGTGTCTCCTGGTAGTGGGCACTCAGACGAAAGAGGGTTCGACTCCCGTCAGCCGTCTCCTGACCAGACGATAGGGATGGGAATTAGATCGTATGACCCAGAAGACCCTTACTGCCCttactccccctccccctccctgctaCGCATAGAGGAGCTGTGTGACAGTGTCGTGCAGTCCCATAGGGACACCAGTCAGTTCAGACTAGAGGAACTACAGGCTCTGAGATGGAAGTTGTTCAGTAGAGAGGAGATCCATGCCTACCAGAGCAAGtcagTAGATGAGATGTGGCAGCACTGTGCCATGAAGCTGACTGAAGCGGTACAGTACGtggtggagtttgccaaaagcatcCCAGGGTTCCGTGGGCTTGGACAGAACGACCAGATCACCCTGCTCAAGACTGgatcgATGGAGGTGGTTCTGGTTAGAATGAGCAGGTGTTTTAACACAGAGAACAGCACCGTCTTCTTCGATGGGAAGTTTGGCAGCACTGAACTTTTCAAGTCTCTGGGCTGTGGTGATCTGATGGTGGCGGTGTTTGACTTCGCTCACAGAATGTGTGCCCTGAGACTGACTGAGCAGCAGATGGCTCTCTTCAGCTCACTGGTGCTCATTAACCCAGatcgcCCCTGTCTTGAGGATAGAGGCAGAGTACATAGAATGAGAAGAGACTTGGAGGTATGCCTCAGCCACATGCTACGCAGAGACAACCAGGAGAGCCTTCAGCACAAGCTCTACCAGAAGGTGTCAGTGTTGCGGTCTCTGTGCAGTCTTCACGTGGAGAAGCTGCACTGGTTCAGCCAGCGCTACCCGCTCACCGTCCACTCTGTCTTCCCTCCTCTATACAAGGAGCTGTTCACCTCTGACCTGCCTTCTGTGGACTCCCTGTGAACTCCCTCTGAACTGCACCGTACATGTTGACAGATAATTAGACAAAGAAACATGCATACAgaagtagacagacacacacaaacacacacaaacacacacagacacacaaacactcagagacacagacacttagagacacacaaacacacacagacacacaaacactcagagacacagacactcagagacacaaacacttacacagagacacagacacacacagacacttagagacacacagagacttagagacacacagacactcagagacacatacacagagacacagacacacaaacttagagacacagacacatgagAATGCATTGATAACATGAGAGGAAATGACTTTGAATGCTTCACTTgttgaataaatatatttttgtcattTCAGAGAGcaatgatttgatttgaaggtaaTTTCAGTAGCCTATTAGTGATTGGACATTGAAGCGATTTTCatgcaaaaaaatgttttatagattgttgttttgtttttccttTTTGAGAGTGTTATTTCGTCCTTGAGATGATGTTATTTTGACTCAGGGCGGCTGTTGTGACTGTATCCAGACCAGTTGCTAGCTGGTATAAATGACCATATTTAGATGATCACTATGAAATCTAATGGGTGTTTTCTGAGTTGTTTTTAAATGTGTGACTTTACAGAGTTGGCTAACCCATCGGACTGAGTACCTGAGCTATAGCCCATGGGCCCCATGCTTCAGGAGCCAAACACACAGTCAAGTATATAGCTAGTCTTCTCAAAGAACTGTGTGTGGATCGAATTTGACCAACAATCCTATCTGTCTCTATCGAGCTTTAAAAGAGGCTGTGTGTTACATTAAAACAGAGTCAGAAATCATAGACAGGCAGAAATGTAAATATGAATAATCTAGAACATAAAGTTGGATGCTGGGTAATATGGGTAATATGTTATAGGACTACAGTATGTAGGTAGGCATTTGAATGACTAACTTTGGGCATGACTGTTATTGTAAACGTGTCAGATTTGTTGCTTTAACATGCTCTCTGTTAGTTTGTCTCCTAAGTGTTACCATGGTGATTCCCATTGAAAAGGCTTCCAATAAACTGCTgatatgatttaaaaaatgactgGTGTTCCTGTATTGTCTGTTTTCCCAATGTACAAAATAGGATGTTTAATTGCATGCCAGGAAGGGAAAGAGCTCGAAGAAACATAGCAGGGGAGAGCTCAGTGCATGCAGCTGCACACTGGTAGAATTGACATGTTTTAACGACACATCTatgataaaacacacacagacattcctGCTTTGAGCCGTCCTCaacggtgtgtgtgtttgattcaTAGACTACCCAATGAGCTGAGTGTGTTCTATCGACATCTGTGTATCAGCAGTGTGCGGATGTCTGTTTTTCTTGTATGACTTTACCTTCAGTACCTCGTAGCTGAAAGTATCCTAACTGGATGTGGGTACAGGACACCACTTCTTAACTGTGTGTGAGAGTGGCAGTGGCTGACACTCAGCTGAGCTTCGTTGTGTGTATGGGAAGACTTTTGTTCCGTCTAAAACTGCCCGTTTTGGGAAAATAagtaatgaatgtatttatgtgGATGCCTTTGTTCGTCGTCTATCTCTGTTGAAACCAATCAATCCTTCTACAGGGAAGATGTTGATTGGTGTAAGACTCTGGTTGTCCAACAGAGGTCAAAATGTCCTTCTTAGTTGTCCTGGCTTGTATGGGCTGTTTTCAGAGCAGATTTTCAGATGCAGCAATGACTGTCTGAGATGCGattttctccttcccaccttgtgTCTTTAGTCAGAGTTTGAAGCACTTTACACGTGCAGCTGCAGACTGGCAGTATCGTGGTCTGgtataatataatgtttacataccctacatgactcatctcatatgtacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251101 lncRNA upstream 33106 6987361 ~ 6988449 (+) True LOC110508323
TU251116 lncRNA upstream 44088 6977004 ~ 6977467 (+) False G220125
TU251182 lncRNA downstream 34464 7079680 ~ 7079902 (+) True G220178
TU251189 lncRNA downstream 57082 7102298 ~ 7103268 (+) True G220184
TU251190 lncRNA downstream 58539 7103755 ~ 7103963 (+) True G220185
TU251191 lncRNA downstream 59472 7104688 ~ 7104965 (+) True G220186
TU251194 lncRNA downstream 62749 7107965 ~ 7108182 (+) True G220189
XM_021588780.2 mRNA upstream 25131 6993067 ~ 6996424 (+) True them4
XM_021588758.2 mRNA upstream 33788 6979495 ~ 6987767 (+) False LOC110508323
XR_005040328.1 mRNA upstream 33788 6979495 ~ 6987767 (+) False LOC110508323
XM_021588767.2 mRNA upstream 33788 6981492 ~ 6987767 (+) False LOC110508323
XM_036967219.1 mRNA upstream 73579 6937600 ~ 6947976 (+) False LOC110520781
XM_036967289.1 mRNA downstream 1519 7046735 ~ 7060355 (+) False LOC100135938
XM_021588832.2 mRNA downstream 1519 7046735 ~ 7061832 (+) False LOC100135938
XM_021588840.2 mRNA downstream 1520 7046736 ~ 7061832 (+) True LOC100135938
XM_036967298.1 mRNA downstream 18402 7063618 ~ 7079482 (+) False LOC110508369
XM_021588862.2 mRNA downstream 18404 7063620 ~ 7075300 (+) True LOC110508369
TU251106 other upstream 35033 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 35033 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 35033 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 35033 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 76576 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 303076 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 314452 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 318082 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 318082 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 318082 7363298 ~ 7365285 (+) True G220435

Expression Profile