RNA id: TU251163


Basic Information

Item Value
RNA id TU251163
length 1369
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC110520784
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7016691 ~ 7045216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatcgcCCCTGTCTTGAGGATAGAGGCAGAGTACATAGAATGAGAAGAGACTTGGAGGTATGCCTCAGCCACATGCTACGCAGAGACAACCAGGAGAGCCTTCAGCACAAGCTCTACCAGAAGGTGTCAGTGTTGCGGTCTCTGTGCAGTCTTCACGTGGAGAAGCTGCACTGGTTCAGCCAGCGCTACCCGCTCACCGTCCACTCTGTCTTCCCTCCTCTATACAAGGAGCTGTTCACCTCTGACCTGCCTTCTGTGGACTCCCTGTGAACTCCCTCTGAACTGCACCGTACATGTTGACAGATAATTAGACAAAGAAACATGCATACAgaagtagacagacacacacaaacacacacaaacacacacagacacacaaacactcagagacacagacacttagagacacacaaacacacacagacacacaaacactcagagacacagacactcagagacacaaacacttacacagagacacagacacacacagacacttagagacacacagagacttagagacacacagacactcagagacacatacacagagacacagacacacaaacttagagacacagacacatgagAATGCATTGATAACATGAGAGGAAATGACTTTGAATGCTTCACTTgttgaataaatatatttttgtcattTCAGAGAGcaatgatttgatttgaaggtaaTTTCAGTAGCCTATTAGTGATTGGACATTGAAGCGATTTTCatgcaaaaaaatgttttatagattgttgttttgtttttccttTTTGAGAGTGTTATTTCGTCCTTGAGATGATGTTATTTTGACTCAGGGCGGCTGTTGTGACTGTATCCAGACCAGTTGCTAGCTGGTATAAATGACCATATTTAGATGATCACTATGAAATCTAATGGGTGTTTTCTGAGTTGTTTTTAAATGTGTGACTTTACAGAGTTGGCTAACCCATCGGACTGAGTACCTGAGCTATAGCCCATGGGCCCCATGCTTCAGGAGCCAAACACACAGTCAAGTATATAGCTAGTCTTCTCAAAGAACTGTGTGTGGATCGAATTTGACCAACAATCCTATCTGTCTCTATCGAGCTTTAAAAGAGGCTGTGTGTTACATTAAAACAGAGTCAGAAATCATAGACAGGCAGAAATGTAAATATGAATAATCTAGAACATAAAGTTGGATGCTGGGTAATATGGGTAATATGTTATAGGACTACAGTATGTAGGTAGGCATTTGAATGACTAACTTTGGGCATGACTGTTATTGTAAACGTGTCAGATTTGTTGCTTTAACATGCTCTCTGTTAGTTTGTCTCCTAAGTGTTACCATGGTGATTCCCATTGAAAAGGCTTCCAATAAACTGCTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251101 lncRNA upstream 52567 6987361 ~ 6988449 (+) True LOC110508323
TU251116 lncRNA upstream 63549 6977004 ~ 6977467 (+) False G220125
TU251117 lncRNA upstream 63549 6977004 ~ 6977467 (+) False G220125
TU251118 lncRNA upstream 63549 6977004 ~ 6977467 (+) False G220125
TU251119 lncRNA upstream 63549 6977004 ~ 6977467 (+) True G220125
TU251182 lncRNA downstream 35320 7079680 ~ 7079902 (+) True G220178
TU251189 lncRNA downstream 57938 7102298 ~ 7103268 (+) True G220184
TU251190 lncRNA downstream 59395 7103755 ~ 7103963 (+) True G220185
TU251191 lncRNA downstream 60328 7104688 ~ 7104965 (+) True G220186
TU251194 lncRNA downstream 63605 7107965 ~ 7108182 (+) True G220189
XM_021588780.2 mRNA upstream 44592 6993067 ~ 6996424 (+) True them4
XM_021588758.2 mRNA upstream 53249 6979495 ~ 6987767 (+) False LOC110508323
XR_005040328.1 mRNA upstream 53249 6979495 ~ 6987767 (+) False LOC110508323
XM_021588767.2 mRNA upstream 53249 6981492 ~ 6987767 (+) False LOC110508323
XM_036967219.1 mRNA upstream 93040 6937600 ~ 6947976 (+) False LOC110520781
XM_036967289.1 mRNA downstream 2375 7046735 ~ 7060355 (+) False LOC100135938
XM_021588832.2 mRNA downstream 2375 7046735 ~ 7061832 (+) False LOC100135938
XM_021588840.2 mRNA downstream 2376 7046736 ~ 7061832 (+) True LOC100135938
XM_036967298.1 mRNA downstream 19258 7063618 ~ 7079482 (+) False LOC110508369
XM_021588862.2 mRNA downstream 19260 7063620 ~ 7075300 (+) True LOC110508369
TU251106 other upstream 54494 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 54494 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 54494 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 54494 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 96037 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 303932 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 315308 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 318938 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 318938 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 318938 7363298 ~ 7365285 (+) True G220435

Expression Profile