RNA id: XM_021588832.2


Basic Information

Item Value
RNA id XM_021588832.2
length 2234
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC100135938
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7046735 ~ 7061832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCTCACACACTCATTCTCTGTTTCATACCACTCCATAAGGACATAACGGTTTGAAAAGAAGGGATTCCAGCTGTCGTTTGTCAAGTCGTTTCCTGAACTTGGCGTGGCTTTGGAACAACTTTGCTAAACACAGGGAAAGAGAGTGGGGGGTGAAAGAGGGCAAAACAGAGGGAGTTGAAACAGTCCAGTGGAAGAGGACAAGGATAACTCCCGTATCAGTACTCAAAATGGGTTGGTCTTGGGTTCTAGCGTGCTGGTGTGCATTAGTGCTGGTGTGCTCGTCTGAAGATAACAGATCCCTTCCTGGCATGTTACAGAGAGAGGCCTCCTTTGACATAGAGGATTTCCTGCAAAGGGAGATCACCCAGTACCCGGACACAGACTTTACACCTGGAGTTCGGCCAATGGCTGGGCCTCGCTCGGTTGGGGAGTCCTACCCCAGTGTCCTCTTCCCCCCTGGCCGGCCCTCCCATAAAAACCTCCAGGCCATCTGTCTCCATAGCAGCCATCGTCCGCGGTACccttcctactccctcccccGCAACGGCGGAGGCCACTTTCGTCGTCGAGCTGAAGCAGTCAACCGGGTAGAGTCCTGGTACAGCGCATGTTGCCATGGGAACGggaaacagcaggtccaggaaGTGACGCTGTGCTGCGTTACACAGGCGTGGGAACAGACCCTGTCCACATTCTGTACTGAGGAGTCCGGAGTGAAGACACGCCATCACCACTGCTGCCAGAAGGAGGGCGGGGCCAGACTGAGCTGTTTCCATAGGGAAAACCCAGACCCCACCTACCTGCCGACCACCCCCATACCTGAACCTGGCTTCACCTTTAACCCCAACACTTGTCACaaGTCCCAGCCTGGTCCATGTGCTGTCAGAGGAGAGAAGCACAAGAGCCCCCAAGCTACTCCCAGAGACTCTGACATCAGTTTCCCCCCTGGACGCCCCACTTTCGACAACATTGGATTGGTCTGCTGCCTACACAACAGCCGACCCCTCTCCACCACCAAGTGCCTGCCACGTACAGGCTTTGGCTGGCTGGCCCGCCAATCAAAGGCCATGAACCGCCTGGAGAGAGGGTTCAACCACTGCTGTAAGGGACTGGAGAACGTGCTACCCTGTGCTGAGGGAAAgTGGCGTGAGGAGCTTGACAGGTTCTGTGAGGAAGAGCAGAAGGGGAGGCCTCACAACTCCTCCTGTTGTGATGTgggagaaggtgaggacaggTATACCTGTTTCTCCTCACTCGCCCCTCATCCAGACTATGAACAAAAGCTTGACTCTGCTTCTGACGCACCACAGACCCACAACCTCGGACACATCTGTGAAACATACAAGATCATCAAGATCTTCCCTGTGGCTCTCCCTGTCCAGAACTTAGTGGACCAATGCTGCTCCCTGCCAGCAGACCAGAGAACTGCATGTGTTCAGATACAGCTAGTGATGCTGTCGCAGACACGCTGTCTTGAGGGGaagccctcctcttcctctgtcttgCAGAAGTcctgccctccctcctccttctcccaggACTCCCCTATGTGCCTCTCCAGACTGCTCATGAATGCCATCACCAAGGCAACCAAGTCCCCACACCTCAGAAAGAGGAAATTCCTCCTCACCTGATTTTGGTTTTACTCTGATGGCAGTGGGCCAATCCGAATTAGCGGTCAGGGCATTTCTGCAGTAGTCACTAGATAACCATGCCAGAAAGGATACAATTGGCTAATACAGAAGAACTGTTGAGCAAGTGCATGATTTAGTCAAACAGGAGTTAGGATGTGGGTAAGAGTAAGCAGAATTTATAGTTAGAAAGTTCCATTTATTCCATATTGTCTAGCATGGCCAGATGACAACCAATTAATGTATGGTATCCGAGTGCACATAATATTTCAGTATTACTGTCAGTGTCTGTCATTAAGAGGGTGTTATAATGTTAGAACACCTGGAGAGCTGATATGAATATAAAAAAGAAGTGGTAATTCAAATGGTGATTTGTTTCGTAAAGCAGATATGTTTCAGAATTGTTAGTTGTATTTTTCATATAGCTCCAGAACTGCTAGTCCAGTTGTCCTGTTCTATTTCTAACATTTGAAATAAATCTTTATAGAATATGTCTTAATCATTTTGGAGTGAAGCACTGCCAGTTATTGTAATTTGTCATTATCTGACACATGAACAACATTGAAATGATTATTTGAATAAACTGAAATGTTGATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251163 lncRNA upstream 2375 7041016 ~ 7044360 (+) True LOC110520784
TU251101 lncRNA upstream 58286 6987361 ~ 6988449 (+) True LOC110508323
TU251117 lncRNA upstream 69268 6977004 ~ 6977467 (+) False G220125
TU251182 lncRNA downstream 17848 7079680 ~ 7079902 (+) True G220178
TU251189 lncRNA downstream 40466 7102298 ~ 7103268 (+) True G220184
TU251190 lncRNA downstream 41923 7103755 ~ 7103963 (+) True G220185
TU251191 lncRNA downstream 42856 7104688 ~ 7104965 (+) True G220186
TU251194 lncRNA downstream 46133 7107965 ~ 7108182 (+) True G220189
XM_036967264.1 mRNA upstream 1519 7016691 ~ 7045216 (+) False LOC110520784
XM_036967256.1 mRNA upstream 1519 7016693 ~ 7045216 (+) False LOC110520784
XM_036967271.1 mRNA upstream 1519 7021555 ~ 7045216 (+) False LOC110520784
XM_021588780.2 mRNA upstream 50311 6993067 ~ 6996424 (+) True them4
XM_021588767.2 mRNA upstream 58968 6981492 ~ 6987767 (+) False LOC110508323
XM_036967298.1 mRNA downstream 1786 7063618 ~ 7079482 (+) False LOC110508369
XM_021588862.2 mRNA downstream 1788 7063620 ~ 7075300 (+) True LOC110508369
XM_021588903.2 mRNA downstream 18618 7080450 ~ 7084307 (+) False LOC110508390
XM_021588897.2 mRNA downstream 18618 7080450 ~ 7084314 (+) True LOC110508390
XR_002471298.2 mRNA downstream 22774 7084606 ~ 7096570 (+) False LOC110508380
TU251106 other upstream 60213 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 60213 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 60213 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 60213 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 101756 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 286460 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 297836 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 301466 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 301466 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 301466 7363298 ~ 7365285 (+) True G220435

Expression Profile