RNA id: XM_036967298.1


Basic Information

Item Value
RNA id XM_036967298.1
length 2839
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC110508369
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7063618 ~ 7079482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggtgTTTCATAAAGAAAGTATGCATATTATCTCTGTTCCCCCCCGCCATTAAATCGATGTCTTTGCAGCCTTATTTAGAATGTTTTACGTACGAACCGGTCTAAGGGAGAtacacaaagtcataaaccagcctatttctacaatgtatcttcttacatttttatttgaaatCTAACCAGAACCACACTGCTGACTgtatgtctaaccttaaccccaaattAATACCAAATAGCACATTTTGGTTTTCATATATTTTTACGATATAGCCCATTTTGACTTTGCCGCTGGCCATCTACTAGCTAGGTGGATACCCATGCCAAAAATTTGTTCTATCTGTTCCGATACCGGCCAATCCAAAATGGCGACCGCCGTTCCAGTTGATTCGGGATTGACTGCTCCGACAGACATTAGGACTCAGTTCTGGAGGAGAGCCTTGCAGAGAGGGTCCAGTGCGTCTCGGAAAGTGGCATCCCCCGAGatGCCTGGATCAAGTCAGAGTATGAAGAAGACCATTGGACACAGAGGAGTTGAGACGAACACTGGAGAGACCACCTATAAGAAGACTACGTCGTCAGCCCTGAAAGGAGCAATTCAGCTGGGCATCACTCACACTGTGGGCAGCCTGAGTCAGAAGGCTGAGAGGGATGTTCTCATGCAGGACTTTGTGGTGGTCGAGAGCATCTTCTTCCCTAGtgaaGGCAGTAACCTGACCCCTGCCCACCACTACAGTGATTTCAGGTTTAAGACCTACGCCCCCATCGCCTTCCGCTACTTCAGAGAACTCTTTGGCATCCGTCCAGACGACTACCTGTACTCTCTGTGTAACGATGGCCTGATAGAGCTGTCTAACTCCGGCGCCAGTGGCTCTCTCTTCTACGTGTCCAGTGATGATGAGTTCATTATCAAGACAGTGCAGCACAAAGAGGCTGAGTTTCTCCAGAAGCTACTACCAGGATACTTTATGAACCTGAATCAGAACAAACGGACCCTGCTCCCTAAGTTCTACGGTCTGTACTGCATCCAGGCGGGAGGGAAGAACATCCGCCTGGTGGTGATGAACAACCTGCTGCCCCGCGTGGTCCACATGCACCATAAGTACGACATGAAGGGTTCCACCTATAAGAGACGGGCCTCAGCCAAGGAGAGGGACAAGACTTTTCCCACCTTTAAAGACCTGGACTTCATCCAGGACCTGCCTGATGGACTACTGCTGGAGACGGACAACTACAACGCCCTTAGCAAGACCATCCAGAGAGACTGcctgCTCCTGCAGAGTTTTAAAATCATGGACTACAGTCTACTGGTGGGGATCCATAACCTGGAGCAggctagtagagagagggagcgaggtgGGGGGCAGATGGGGGACAGTGGGGGGTCAGAGGGGGCGGTGACCCCAGACCAGCGCCGACCCCAGGCCCAGAAAAGTCTATACTGCACAGCCATGGAGTCTATACAGGGAGAGGCCCGCGGGAAGGGAGCCCTGGAGTCTGAGGACCATATGGGCGGGATCCCAGCCAGGAACTCTAAAGGAGAGAGGTTGCTGGTCTTTATCGGCATCATCGACATTCTGCAGTCTTACAGGTTCATCAAGAAGTTGGAACACTCGTGGAAGGCCCTCGTCCATGATGGGGATACAGTGTCGGTGCACAGACCAGGCTTCTACGCTGAGCGCTTCCAACAATTCATGTGTAACACAGTGTTCAAGAAGATCCCATTGAAGCTCTCCCCATCCAAGAAGTCTCGTGGTGGGGGTCCGGGGGGTCTGAGGAGAGCTCCTACCCTGGGAGGCCCCCCCCTCTCCCACGCtgctggacagtctgtggtggactCTCGACTCGTCTACCAATCACACTTCAACAAGGCTGACGCAGAGGGAGACAGTGGCATGCAGTCGGGCAGGCCAGACCTGGTGCCAAGGACACCTCCCCTGGCGGGAGGGTCAGGGGATGCAGAGGCCAACTTTTCCACGTCCTCATTAGGAAGCACAGgactcacctcctcctctcctctgctacagtcAGTAGGGGTTGAGGTACATAGAGCAGTAACAAGCACAGACCAAGACCACGGTGTCTCCCACAGtatggGTGCGGAAGTGGAAGCGTCAGGTGATCAGTCGGGTAATGAAGATGCCATCTCACTATCAGACATTGTCCCAGAGACTAACATCTGCTTTTAACAACTGATCTGGAGTCATCTGAGGAAAAGGTGATTCTGGAACCAAGGAGATGCTGGATTAAACCCATTGCAGCGTCTGGTGACTTGACTGGACCACAGCACAACAGACACCTCACCCTTTGGTGCTCAAAGGGCGGTACACTTGCAACACAGACACTACAGAACATATGAACTAATGCAATATGAACAAGTCTGCCATCTTAAAGTTTCAAGAATCGTATTTATTGTATTTGTATTATGACCTTGTAGCCTGAAATGATTCATAAGTTGTACATGTAGATGATTGTACGTATAATAATGTATTCTTCTGACAGGAAATGTCAGACTTAAGTAGTGTATTGCATATGGGAGGGGATTGTTTGACAATTTCACTTTTTATATTTCATGCTTGATTTTGATAGTGATATATTCTCCATTGTTCTGGGGCAAGGATGTCCCATGCTTTTCTACGTTGAATGTTTCACACAGCCTCCGAGCCAATGTTGCTGGTTACCGTCTATGCTTCAATTACTCTATTTTTACTCTGCCtgtataaaatatgtatataGTAGTCACGGAAATGCCTTCTCATGCTGCCTGTTCCTTCTACCATCTTTCAGTGATGTAATGTTTTTCATATTGGCTCTGATTTTAGAATAAACTTATTTTCTAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251163 lncRNA upstream 19258 7041016 ~ 7044360 (+) True LOC110520784
TU251101 lncRNA upstream 75169 6987361 ~ 6988449 (+) True LOC110508323
TU251117 lncRNA upstream 86151 6977004 ~ 6977467 (+) False G220125
TU251182 lncRNA downstream 198 7079680 ~ 7079902 (+) True G220178
TU251189 lncRNA downstream 22816 7102298 ~ 7103268 (+) True G220184
TU251190 lncRNA downstream 24273 7103755 ~ 7103963 (+) True G220185
TU251191 lncRNA downstream 25206 7104688 ~ 7104965 (+) True G220186
TU251194 lncRNA downstream 28483 7107965 ~ 7108182 (+) True G220189
XM_021588832.2 mRNA upstream 1786 7046735 ~ 7061832 (+) False LOC100135938
XM_021588840.2 mRNA upstream 1786 7046736 ~ 7061832 (+) True LOC100135938
XM_036967289.1 mRNA upstream 3263 7046735 ~ 7060355 (+) False LOC100135938
XM_036967264.1 mRNA upstream 18402 7016691 ~ 7045216 (+) False LOC110520784
XM_036967256.1 mRNA upstream 18402 7016693 ~ 7045216 (+) False LOC110520784
XM_021588903.2 mRNA downstream 968 7080450 ~ 7084307 (+) False LOC110508390
XM_021588897.2 mRNA downstream 968 7080450 ~ 7084314 (+) True LOC110508390
XR_002471298.2 mRNA downstream 5124 7084606 ~ 7096570 (+) False LOC110508380
XM_021588881.2 mRNA downstream 5125 7084607 ~ 7098905 (+) False LOC110508380
XM_036967328.1 mRNA downstream 5449 7084931 ~ 7098905 (+) False LOC110508380
TU251106 other upstream 77096 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 77096 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 77096 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 77096 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 118639 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 268810 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 280186 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 283816 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 283816 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 283816 7363298 ~ 7365285 (+) True G220435

Expression Profile