RNA id: XM_021588897.2


Basic Information

Item Value
RNA id XM_021588897.2
length 1582
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110508390
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7080450 ~ 7084314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaggtgccaccaacctcctgtggtgtacgTGTAAGTCATTGTCAACAAATATATGCGCAGGTATATTGGGGCTGAACTGCATTTCCCATCAGTTCTGGTGACGTAGATAGCAACAAGAAGATTCCAAGATGGGGCTCGAAAGTACTATGGTCTGTGTGGACAACAGTGAGTATATGAGGAATGGAGACTTCCTCCCCACCAGACTTCAGGCCCAGCAAGATGCTGTCAACATTGTGTGCCACTCCAAGACGCGCAGCAACCCTGAGAACAATGTGGGCCTCATCACCATGGCCAATAACTGTGAGGTGCTGACCACATTGACTGCAGACGCGGGGAGGATACTGTCTAAACTGCACGCTGTCCAGCCCCGTGGAAACATCAGCTTCTGCACAGGCATCAGAGTGGCTCATttgGCTCTGAAGCACAGACAGGGGAAGAACCACAAGATGCGTATAATTGCCTTTGTGGGCAGCCCAGTGGAGGACAACGAGAAGGATCTGGTGAAAATGGCAAAGCGTCTAAAGAAAGAGAAAGTCAGTGTGGACATCATTAACTTTGGAGAGGAGGAGGTGAACACAGAAAAGCTGACGGCCTTCATCAACACTCTGAATGGGAAGGAAGGAGCAGGGTCCCACCTTGTGACAGTGCCTCCAGGCCCCAGTCTGGCTGAtgccctactgtcctctcctatcCTTGCTGGGGAGGGAGGAGCCATGCTGGGCCTGGGGTCCAGTGACTTTGAGTTTGGAGTGGACCCCAGTGCAGACCCAGAGCTGGCACTGGCTCTGAGGGTGTCTATGGAGGAGCAGAGACAAAGGCAGGAGGATGAGACTCGCAGGGCAGCAGTGGTGTCTGCTGCTGAGGCCGGGGTTCCCTCGCCTACCGCTGACGAGTCAGACGAAGCTCTGCTGAAGATGTCAGTCCCCCAGGCTGACACGGCCACGCCCGCTATGCCCGACTTCAGCCGCATGACGGAGGACGAGCAGATTGCCTATGCTCTACAGATGTCCATGCAGGGTGGAGCAGAGTTTGGTGCAGAGTCAATGGACATGGACACAGGAGCCCCTGTAGACTCAGAGGGTGCTAAGGATGAGGAGGACTATGATGTGATGCAGGACCCAGAGTTCCTCCAGAGCGTCCTGGAGAACCTACCGGGTGTCGACCCCAACAACGAGGCCATCCGGAATGCCATGGGCTCGCTGGCCTCACAGACAGGATCCAAACCTGACAGCAAGAAAGACAAAGACGATGAGAAGAAGAAATGAACATTTACACAGTAAACATAATCGATACCCTGGCGTTGACCTGTTGACAATGGCTCCTTTTAATATAATAGTTGTGCAAACTGTAACCTCAAATTACCTCTAGGTTTTTTTTGTATCGCCATACTCAAAACAGTTGAACAGGGCTTTCTTTATCTTTGTTGTGTCAAGGTTAATGATGATGCAtgttgcctttaaaaaaaatattaaaaagttTGTACTAAAGTGGGACCTTATATCAACCCAAGCACATTCAGTAAGTGTACATTTATGTgctgataataataaatacatttacataaatcAAGAGAACACCTCA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component

KEGG:

id description
K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251182 lncRNA upstream 548 7079680 ~ 7079902 (+) True G220178
TU251163 lncRNA upstream 36090 7041016 ~ 7044360 (+) True LOC110520784
TU251101 lncRNA upstream 92001 6987361 ~ 6988449 (+) True LOC110508323
TU251118 lncRNA upstream 102983 6977004 ~ 6977467 (+) False G220125
TU251189 lncRNA downstream 17984 7102298 ~ 7103268 (+) True G220184
TU251190 lncRNA downstream 19441 7103755 ~ 7103963 (+) True G220185
TU251191 lncRNA downstream 20374 7104688 ~ 7104965 (+) True G220186
TU251194 lncRNA downstream 23651 7107965 ~ 7108182 (+) True G220189
TU251187 lncRNA downstream 28669 7112983 ~ 7113723 (+) True LOC110508400
XM_036967298.1 mRNA upstream 968 7063618 ~ 7079482 (+) False LOC110508369
XM_021588862.2 mRNA upstream 5150 7063620 ~ 7075300 (+) True LOC110508369
XM_021588832.2 mRNA upstream 18618 7046735 ~ 7061832 (+) False LOC100135938
XM_021588840.2 mRNA upstream 18618 7046736 ~ 7061832 (+) True LOC100135938
XM_036967289.1 mRNA upstream 20095 7046735 ~ 7060355 (+) False LOC100135938
XR_002471298.2 mRNA downstream 292 7084606 ~ 7096570 (+) False LOC110508380
XM_021588881.2 mRNA downstream 293 7084607 ~ 7098905 (+) False LOC110508380
XM_036967328.1 mRNA downstream 617 7084931 ~ 7098905 (+) False LOC110508380
XM_036967325.1 mRNA downstream 822 7085136 ~ 7098905 (+) True LOC110508380
XR_005040361.1 mRNA downstream 25668 7109982 ~ 7113781 (+) False LOC110508400
TU251106 other upstream 93928 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 93928 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 93928 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 93928 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 135471 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 263978 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 275354 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 278984 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 278984 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 278984 7363298 ~ 7365285 (+) True G220435

Expression Profile