RNA id: XM_036967325.1


Basic Information

Item Value
RNA id XM_036967325.1
length 6109
RNA type mRNA
GC content 0.54
exon number 11
gene id LOC110508380
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7084606 ~ 7098905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGTCGTAACTAGCTACATAGCTAAATGCACATTCTGCCTGATAACGATAAAATATCCACATTTTGTGTTCTCGCAAACTCAGCGagaatggctagctagctagtacagcTGCACTACATGAAGCATGTGCAACAagggtggaaaacgctgtctgaAAACTAGGCCTAGCTATCGGTATTGCTAGCTGCCTTTGCTGTACTAACTTGCTAATTTTAGCTCAGTAGCCAGTTCACACGAGGGCAGTAGGGGAACTTAAACTTTCAAATAAGTTTCTAACTTCCAAATAAAGTGGTTGCTTCTAACTGCTAACTCATTCAACAAGTTTGCCAGGTTTTGTAATCCGGGAATGGGGGACATGAAAACCCCAGATTTCGACGACTTGTTGGCAGCCTTCGACATTCCAGACATCGATGCCAAAGAGGCCATCCAGTCTGCACCGGAAGAGGGTGGGGAGGGGTCAGGGAAGGTCGGGGGAAGCGTGTCGGGGGCCAGGGGTCCCTCACCAAGACCTTCCAGCCCCACTGACTCCCCTCCCAACTCCCAAAGTGAGCCTCCAGTGGTCAGTGTGATTGTTAAGAACAGGGTGAGGCCTGACTCCTATgaagagactgaggggtcagatGAAGAGGATGGGGACAGCCCTGGGGGCAGTGGGACAGACCCTGAGGTGGAGACTGGGACGGGAGTCAAAGGGGGCCTGCTGAATTCACAACTGGCTCCTAGGATGCCTGGTCTGGTCTCCTCAGAACCTCTTCTCCAGAATGGGTTTGAGGGGTCCACAGTCACGCTGGAGCCCAGTGTGAGAGGCCAGGGGCTGGGCCAGGCATTGGGTCAGGCCAATGGGGAACTCTGGTCAACCTGCTCCCCTCCCACTGCAAGTGAAGGAGGGGGCAGCATTGGAGGCGCAGGGGGGTCGGCCTGCACAACCAAACATACAGTTAATATTCTCAACAGACGgaaacctctctcctctcatacCTCTGCTGGTCCTataacctccacatcctcctcatcatcatcgtcGTCCTCACTCTCTATCAACCCacacctctcttctccctccatcctgaGTGAGGACACTCTGTGCCCTCCCGGGCCTctttcctccccccctccctccaacgGAAGCCTGAGAGTGGGGGTGAGGCGCATCATGGACTCGGATGAGGACGACTCTGAACCGGATTTGGGAAGCCCGCTAGTGATTCAAGAGAGCCCAGATTCTCCCATGTGCTCCCCTCCCAAATTTCCACGCAGACACCGCCAAGTGTCCTCTTCAGAGCTGTTCAGCTCCCcaactcccccctcccctcctctcctctcttgccctcctcctctctcctccaaaccccctccctccatctctcagacATCCTCCAGCTCTAAACCGCCCCCTCCAGATGAAGTACCCTCCACCCCCaggtctccctcccctcctcctgccCAGGCCCGTCAGTCCTGGCTGGCTGCCGCCCTCAGTAACCCCAGACCCATCTCTAGCCCAGTGATGGAGGAAAGAAACCCGGAACATGTGATCGAGGAGAGGGATTCACCAGAGAGCCCCCCGCCTGACCAGACAGGTTCTGCTATGTCCACTTTGTCCAAGAGGAGCTCCAGCCCGGCACCAACCTCAGCATCAACTCAACAGGgggctagagagggagaggagcccaTGGCGAGTGAGCCTAGCCTGGAGTGCAGATCAGACAACAGTGAGAAGATGGAGGTTGTGGATGGAAGACAAACAGGAGACACAGAGACGGCTCCGGCCAATTCTACGACAACATCAACAGCCCCCGTTCGCCCACTCAAAGTCCGAATCAAAACAGTCAAGACCCCGACAGGCAGCATCACCAGGACAGTGACGCGAGTAGCATCCAAAGGAGCAGGGGGGACCCCCTCAAAAGGCGCAGATGGCTCCAAACCCTCCCCGGGGGGTCGTAAGGTCCTCAGCCGGTCCAAGAGGGTGGCATCTCAGCAGCCTCCGCAGCAGAAGTCAAAGGGTGGCAGCCTCCTGCCTGTGTCTACACTCCAGGATGCAAGTACTGCCATGTTGATGGCCGCCAGCAAGGCCCAAAACAAGATGGCCGCCGACAGCAACAAGCCCAAAGTGTCGGCTACGGCTGTCAGCATCACCAAGTCAGCagccctcccctctgtctcttccgcctcttcctcttcccccagATTCAGTCCAGGGGGGGCTGGCGTGCGCAGCCTGGGCCAGAAGACCCTGAATGGGGGTGTGTCTgtgtccccctcccccctcctcacccctcaggGGGGCAGTAGACCAGCCTCCATAGTGAACAGTACAGGAGCCATTATCTCCAGGAGCCAGTCCAGTCTGGTGGAGGCCTTCAACAAGATCCTCAACAGCAAGAACCTGCTGCCCAGCTACAGACCAGACCTCTGTACACCACTACCACCGGAGTGGGACCTGCCTCTGCCTGCACAGGGCTACCGCTGTCTGGAGTGTGGCGATGCGTTTGCCCTGGAGCGCAGCCTGGCCCGCCACTATGACCGGCGGTCCCTGAGGATTGAGGTGACTTGTAACCACTGTGCCAAGCGGCTGGCATTCTTCAACAAGTGCAGCCTGCTGCTCCACGCCAGGGAACACAAGGAGAGGGGACTGGTCATGCAGTGTTCCCACCTGGTCATGAGACCTGTCAGTGTAGAGCAGATGATAGGCCAACAGGACACCACTCCCATcggcatgctctctccctccctctccacctcctctgtcCCAGCGTCCTCTGCTCCGGCTGTGACTTCAGCCATGACCCCGACAACCCTGAGCCCCGCCCCCCAGCTGCagcagccaatcatcagtaagaAGGCGACAGAGCCGGTGCTGTACACCAATAACAAGTGTCCTGAGTGTAAGGTGCAGTTCTGCAGCAAGGCTGAGGTAGCTGCCCACTTCCAAGAGGTCAAACCAGCCCTTAACACTTCCTGTACGGAGTGTTCTCCTCCCATGCTCCTTCCTAACGGCTGCAGTGCCTCTGCTCACGCTCGCATCCACAACCCCCGCCCCCCCTATGTCTGCCCAGAGTGTGGGGGTGTGGCCAAGCAGCCAGCCTTTCAATCCCATTTGGAGGAGGCCTGTCTCCATTTCACACGACGCATCGGATACAGGTGTTCTAGTTGTCAGGTGGTGTTCGGAGGGTTAAACTCGGTCAAGTCCCATATCCAGACGGCCCACTGTGAGGTGTTCCATAAGTGTCCCAGCTGCCCGATGGCCTTCAAGTCCTCCCCCAGCGCCCAGAGCCACATCAACACCCAGCACCCCACACTCACTGGAGGACAAGCcaaGATGATCTAcaagtgtgtgatgtgtgacacGGTATTTACCCAGAAGCCACTGCTGTACGTCCACTTTGACACCCACCTAGTCAAGCAGAAGGTGCACGTGTTCAAGTGTCCTGAGTGCCCCAAGCTCTACGCGCAGAGAAGTTCCATGCTGGAGCACATCAAGACTACTCACAGAGGCCCTGCGGTCAAACAGGAAGTTCCCGTTGCCATGGCGCCCTCTCCTGCCCCTCCCCCCCGGGTGCGGAGCTCGGTGAAGACGGAGAGCTCTGACGGAGAGGAGTggggaagggaggaagaggaggaggaggaagagaaggatggagagaccAATAAGACAAGCCCAGGGTGGAGCTGTGCTCCCTGCCACGCCCGCTACGCTGACAGAGAGGACTACATTACCCATATGGCCGAGCAGCATGGCAAGATCCTGAAGAAGTTCCCGTGTAGTCTGTGTGAGAACTCCTTCTCCTCCACGTCCAGCCTCAGACGCCACATCAGAGTCAAACACAAGGGCATCAAACGAGCCTTCCACTGCCGgttgtGTGGTGAGGGTAAGAGGACGTTCAGCAGTAGACTGGTGTTGGAGAGACATGTCCAGCTGAGACACGGCATGTCAGCTCTGGACACAAAGCGAGGGAGGGGTGCAGAAGGGGCCGACAGTTCCTCGGAGCAGGACGGAGGCTCCAACCCTCCGTTCACTGTTTCAGCTGAGGAAGACGGAGGAGGAGGGTTGAagactgaggaggaagaggacgatTTGACCGAAGGCATCATCCCTGCTAAGAGACCTCGCGTCACCTCCTCGGCCCCCCCTCACCAGCCAGAGTCTGGGTTCCACTGTACTCCGTGTGGCTTCACCACCGAGGACCGCGCCGTCTTCCTGGACCACATCCCCCAGCACCGCTCCGAGGCCCTGGGGGGAGGAGTCAGCCTGCAGTGTCTACAGTGTGGAGCCTGCTTTGCCTCcgccccctccctctcccgccACCGCTTCATCAGCCACAGGGTTCGAGACACGCCCCCTGACAACCACAGCCGTCATGGCCATAACGACCGCTCCCTGACATCCTCGCCCGGCAATGGCGGTAACCACGGTGACGGGAGTCCCAGAGGGGGCTCCCTTCCGGGGTCTCCCTCTTCCTCGTCTCACCCCCCCACACCGCTGGGGGAGGACGGGGAGGGCAGGGTGGGGTGTAAGGTGTGTGGGAAACGCTTTGAGAAGGTTTCGGATCTGAACACACACTTCAGGACTCACGGCATGGCCTTCATCACTGCACGCAAGACAGACAAACCTGtctaagagagagggagtggaaggaggagagaaagataatattttggagggaaggagggtgagGGAGTACTATAAACTGCAGATATTTTAGtaagagagaggagatatgggAAGGAAAGCTCTTCACTGTAAGCTGTTCTTCAGCAGTGTGTTCCTGTCATTACTTATCCAACACACAAGCACATTGTGATAACAGTTGTTTTCATTCAATGCTTATTTAATTTTCTGTCACATTTGTCATATGGCAGccataacctgtgtgtgtgtttgtctgactgATTCTGGACGCAGTACCTCAGGTGCTGTACCCGTCTAAACTGAGGTAGTATTAACatctggaggctgctgaggggaggacggctcataataatggctggaacggaacaaATGGAaaggcatcaaacacatggtttccatgtgtttgatgtagttaataccattccactgattccactccagccattaccacgagcccatcctccccaattaaggtgccaccaacctcctttgGTTGTAAATGACTTATGAAACGCATTATTACAGGTTATATTACCAAATAACACTTCCATTCAGAAGTGTACTTTTTAAAATGGAGACAGTTAACCACCAGTCAGTCTACAGCTGAGTTCTATTAGGTTTCTGTTGTCTGTCATCAACAGGGAATGTGACTGGTGTTGGAAGAGACTAGTCAACATGGGGGTGTGATTTGCTTATTGATTTGAATGTTTGTTTTCTATGGTTCATCCAAGCACAGAATCTCACAGTGGATTGGTGACAGCCACCACTGGTCTTTCTCTGTGTAGAGCCCGTCCCAGTTCTCATTCTCACTATTGCATTGATTTTCTTGTAGTTTTGTTCATAGGCTTTGATTTAAGGGTTTGTGTATGTGCGGGTATTTGTTTTGTCTGTTGAATGTTCTCCATTCTCATCCCCGTCCGTCTAGCCATATAGTATGATCAGGGATGAGATTGGCTCCACAGAGACGTCAGGCAGAGTATTCCTGTTGATCCGGCCTCGTAACATCAGGAAACATCCCATCTCAAGATGCCCCTCTATAACCTGGAGGGGTTGGGTTGGACCCTTCCATTACTAAAGTGTGGTTGTACTTGACCACAACTGAACCATAACCATGTAAATATGAGTACTAGACATATATGATATGGATATGGATGGAGTGATAGTGAAACTCCTGGTGTAGGAGTGGAGGTGTGAAGGGTTGAGGACAGTGATTGTATGCTAAAGAAAAGCATGTAAGGCGTGTTGaactacagtaaaaaaaaaaaagatattaaGTTAAAAAAGTTAGTCACCCAATCAGCGGTGTTAACTGTTCTCTTCTACTCTTTTGATAAAGGTATTGTGTGCGTGTCTCCAGCTAGAGTTTCTTCAGTCTTCAGAGATTACAATGTTAACACACAGCCCTCTTTCCCCCTGTAACCCAATTCTATGTTTTCTTTCTTGCGTAGAGCATTTCTAATAAAATACCCAGAGAAA

Function

GO: NA

KEGG:

id description
K24375 ZNF687; zinc finger protein 687

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251182 lncRNA upstream 5234 7079680 ~ 7079902 (+) True G220178
TU251163 lncRNA upstream 40776 7041016 ~ 7044360 (+) True LOC110520784
TU251101 lncRNA upstream 96687 6987361 ~ 6988449 (+) True LOC110508323
TU251118 lncRNA upstream 107669 6977004 ~ 6977467 (+) False G220125
TU251189 lncRNA downstream 3393 7102298 ~ 7103268 (+) True G220184
TU251190 lncRNA downstream 4850 7103755 ~ 7103963 (+) True G220185
TU251191 lncRNA downstream 5783 7104688 ~ 7104965 (+) True G220186
TU251194 lncRNA downstream 9060 7107965 ~ 7108182 (+) True G220189
TU251187 lncRNA downstream 14078 7112983 ~ 7113723 (+) True LOC110508400
XM_021588897.2 mRNA upstream 822 7080450 ~ 7084314 (+) True LOC110508390
XM_021588903.2 mRNA upstream 829 7080450 ~ 7084307 (+) False LOC110508390
XM_036967298.1 mRNA upstream 5654 7063618 ~ 7079482 (+) False LOC110508369
XM_021588862.2 mRNA upstream 9836 7063620 ~ 7075300 (+) True LOC110508369
XM_021588840.2 mRNA upstream 23304 7046736 ~ 7061832 (+) True LOC100135938
XR_005040361.1 mRNA downstream 11077 7109982 ~ 7113781 (+) False LOC110508400
XR_005040362.1 mRNA downstream 11439 7110344 ~ 7113781 (+) False LOC110508400
XR_005040360.1 mRNA downstream 11443 7110348 ~ 7113781 (+) False LOC110508400
XM_036967358.1 mRNA downstream 63045 7161950 ~ 7170443 (+) False LOC110508415
XM_021621564.2 mRNA downstream 249226 7348131 ~ 7357408 (+) False LOC110536044
TU251106 other upstream 98614 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 98614 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 98614 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 98614 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 140157 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 249387 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 260763 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 264393 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 264393 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 264393 7363298 ~ 7365285 (+) True G220435

Expression Profile