RNA id: XR_005040360.1


Basic Information

Item Value
RNA id XR_005040360.1
length 1436
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110508400
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7109982 ~ 7113781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatgtttatatcccaggacaaattggCTAGCAACAGAAAGCTAGctattgccataaatgtttaattattttcgatctgtccccaaattaatataggtggttcagagtttgtttttatATGTCAACCTGCATGTCCTGAGCTTGTCTGACACCAGACTCTGCGGTTTCAGAGTCTACGAGCCAGGATAGGGAGCAGGTTGCcgtttgtcatgaatcttgccctgtaTGTGTAACAGTGTAACTTCAGACCTTCCAGACACCAGGGTGGACAAAAAAAAGCACGCTTGCTGTCTGTTCAGCATGTAATTTGAAGTAGGCTAGAGGCGGAGAGGGTAGAAAGTAGGGCTGCACGCACCGGTAGATAACAGTAGCCAGAAAATACTGGACCGGTACCAGACACCAGGGTGGACAAAAAAGCACGCTTGCTGTCTGTTCAGCATGTAATTTGAAGTAGGCTAGAGGCGGAGAGGGTAGGAAGTAGGGCTGCACGCACCGGTAGATAACAGTAGCCAGAAAATACTGGACCGGTACCAGACACCAGGGTGGACAAAAAAGCACGCTTGCTGTCTGTTCAGCATGTAATTTGAAGTAGGCTAGAGGCGGAGAGGGTAGAAAGTAGGGCTGCACGCACCGGTAGATAACAGTAGCCAGAAAATACTGCGCCGGTACCAAAGGATACAACCGCCAGGTTGGATTCGGAAAAAGtTGCAATGAAGGACATGTGTTTCCTGTGTAACGACACAAAGTGCCCAGAGGTGACGAAATGTTTTGATCATAATGGTGACCTGAACCAGAATCTGCTGACGATGCCAGGTCCTTTCCAGCAATGCACATCCACCCCCTATCCTCCTTCTGGGAGGTGCACCATTTGTAGTCTGGATTATTATTACACTGTGTGCAGAAACGTCTCAGAGAGCATCCAGCCTGCCCTGGAGGCCAACAGCACAGCCATTACCAACTATGAACAAGCCAATTGCCCTGTCATCGGCATCGCACCAACTACTGTGAATGGTTCAGACTTCACGGGAGCTGCTGCTCAATATGGACGTCCTGGGGGTGAACTGTGGTGGTGTTTACTGATACTCGTCCTGGTCGTTGTTTGCATTGGCATCATTGCTTACAGGTGTATCAAAAAGCGCAAAATAGAAAACCTTGTCATATAAGGCACTCAGGACTACCCATCCCTTAACCAAGCTATTTGGACACAACCACCAGAGACAGGGACAGCACTCAGGACTACCCAAACCCCCAGATCAGGATGCTGCTGCATTATCTCTGCCTTAATTCCATCACTTTAACTCTTCTTAAAGTTGTAatcttttaatacattttcacatTCAGATTCTTGTCAATCAGTACCATTAAACCAGTGCCTTGGATAATTGTTGGTCCTCTAATACTGACACCAGTCTATTAAAGCCTACTCTTATTCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251194 lncRNA upstream 2166 7107965 ~ 7108182 (+) True G220189
TU251191 lncRNA upstream 5383 7104688 ~ 7104965 (+) True G220186
TU251190 lncRNA upstream 6385 7103755 ~ 7103963 (+) True G220185
TU251189 lncRNA upstream 7080 7102298 ~ 7103268 (+) True G220184
TU251182 lncRNA upstream 30446 7079680 ~ 7079902 (+) True G220178
TU251319 lncRNA downstream 2281 7116062 ~ 7116373 (+) True G220273
TU251321 lncRNA downstream 3706 7117487 ~ 7117755 (+) True G220275
TU251361 lncRNA downstream 48245 7162026 ~ 7168752 (+) True LOC110508415
TU251417 lncRNA downstream 95341 7209122 ~ 7228957 (+) True G220352
TU251420 lncRNA downstream 114230 7228011 ~ 7228357 (+) True G220355
XM_021588881.2 mRNA upstream 11443 7084607 ~ 7098905 (+) False LOC110508380
XM_036967328.1 mRNA upstream 11443 7084931 ~ 7098905 (+) False LOC110508380
XM_036967325.1 mRNA upstream 11443 7085136 ~ 7098905 (+) True LOC110508380
XR_002471298.2 mRNA upstream 13778 7084606 ~ 7096570 (+) False LOC110508380
XM_021588897.2 mRNA upstream 26034 7080450 ~ 7084314 (+) True LOC110508390
XM_036967358.1 mRNA downstream 48169 7161950 ~ 7170443 (+) False LOC110508415
XM_021621564.2 mRNA downstream 234350 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA downstream 234350 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA downstream 234362 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA downstream 234653 7348434 ~ 7357408 (+) False LOC110536044
TU251106 other upstream 123826 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 123826 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 123826 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 123826 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 165369 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 234511 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 245887 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 249517 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 249517 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 249517 7363298 ~ 7365285 (+) True G220435

Expression Profile