RNA id: TU251361


Basic Information

Item Value
RNA id TU251361
length 398
lncRNA type sense_over
GC content 0.49
exon number 4
gene id LOC110508415
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7161950 ~ 7170443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGCCGCTGACGTTATGCAGCATTTTGGGCACTAGAGCTCTCTATACATCTCTACGCTCTGAGCGGCACACCTGCAACCAATTTTATATTTTAGTTCTGTGCCATACAATCCAGGCAGTTTTAAAGAACCTCTCTACCTTTATCTGTGCGTCCAATACTCGAACTAACATCCAAACATGAGTGGGGCGATACATCCAATCTGCCTGGCTCTGtgtctggctggctgggctgTATCTGGTGCTTCTGTTGAAGCTCAGAAGACCTCCCCAGTCTGTTACCTCTGTAACCATGATAACTGCCCAACCGTTGAGTATGTTTATGACCATTTTACTGCTAATTTGACTCTGTGGTCGCGAGGTAAAATGGTGGACCTCCCTCCCTGCCCCACCCACTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251321 lncRNA upstream 44271 7117487 ~ 7117755 (+) True G220275
TU251319 lncRNA upstream 45653 7116062 ~ 7116373 (+) True G220273
TU251187 lncRNA upstream 48303 7112983 ~ 7113723 (+) True LOC110508400
TU251194 lncRNA upstream 53844 7107965 ~ 7108182 (+) True G220189
TU251191 lncRNA upstream 57061 7104688 ~ 7104965 (+) True G220186
TU251417 lncRNA downstream 40370 7209122 ~ 7228957 (+) True G220352
TU251420 lncRNA downstream 59259 7228011 ~ 7228357 (+) True G220355
TU251414 lncRNA downstream 59661 7228413 ~ 7237728 (+) True G220350
TU251424 lncRNA downstream 77710 7246462 ~ 7249188 (+) True G220359
TU251426 lncRNA downstream 81312 7250064 ~ 7251514 (+) False G220361
XR_005040361.1 mRNA upstream 48245 7109982 ~ 7113781 (+) False LOC110508400
XR_005040362.1 mRNA upstream 48245 7110344 ~ 7113781 (+) False LOC110508400
XR_005040360.1 mRNA upstream 48245 7110348 ~ 7113781 (+) False LOC110508400
XM_036967328.1 mRNA upstream 63121 7084931 ~ 7098905 (+) False LOC110508380
XM_021621564.2 mRNA downstream 179379 7348131 ~ 7357408 (+) False LOC110536044
XM_021621583.2 mRNA downstream 179379 7348131 ~ 7357408 (+) False LOC110536044
XM_021621592.2 mRNA downstream 179391 7348143 ~ 7357408 (+) False LOC110536044
XM_036967426.1 mRNA downstream 179682 7348434 ~ 7357408 (+) False LOC110536044
XM_036967452.1 mRNA downstream 268259 7437011 ~ 7447882 (+) False LOC118945274
TU251106 other upstream 175504 6979131 ~ 6986522 (+) False LOC110508323
TU251108 other upstream 175504 6979492 ~ 6986522 (+) False LOC110508323
TU251111 other upstream 175504 6979559 ~ 6986522 (+) False LOC110508323
TU251107 other upstream 175504 6981569 ~ 6986522 (+) False LOC110508323
TU251120 other upstream 217047 6938600 ~ 6944979 (+) True LOC110520781
TU251468 other downstream 179540 7348292 ~ 7353630 (+) False LOC110536044
TU251513 other downstream 190916 7359668 ~ 7364446 (+) False G220435
TU251514 other downstream 194546 7363298 ~ 7364446 (+) False G220435
TU251520 other downstream 194546 7363298 ~ 7365285 (+) False G220435
TU251521 other downstream 194546 7363298 ~ 7365285 (+) True G220435

Expression Profile