RNA id: XM_036963718.1


Basic Information

Item Value
RNA id XM_036963718.1
length 4613
RNA type mRNA
GC content 0.47
exon number 10
gene id il6r
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7158585 ~ 7220080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcAACGTGTTATAAAGTGCTTGATTTGTGCCAGAACGCAGAAGTACAGAGTATCGCACCTCAAATGTATTACTGTTTTGAGTTTTGGCACCTCTTACAGAGTTTTGCTTTAAAATATTGTGGCGTTCTGCCAGTGGCACATAATTATAAACAGTAGGGGCGCCCAAAATAAGTACTGtcacctatttcagtccacttCAAGCACTGGTGTCATAGATGGATACAGCAGGTTGATGTTGGGTTTCAGTGAGAACGTTCAAGTTAAGAAAGTTACTCAAGTCTTTGTAAATCCAAAGAGGAAGTGTCAACTGAAATATAATTATTTACAGTTGACATCAAAGTATGATTTCATTTGTAGGGTGACTGTACAGGGAATGTAGGGAATGTTTATAATAAGGGAAACAATCAATCTAACCAATTTATAGCACTTTTTACAGACGTTTGTCTCAATGTTCTTAACCGCAACCCGGGCCTTATCTCCATAACCAAAAGAACAAAACAAGATGAACGTGGCCTTCGGAGAAGCAGGTTATTATTACTGACCATGTCATTAGGACATGTCAAGATTACAACAAAATGTTTGCTCAATCTCCtgaaaaagtagtgtactactaaACCTAgtgtttgttttgtcacatactCTCCCCAGCGCGCTGGCCTCGCAAAAGTGCTTCTGGCCCTTCAAACATGGACAGTTTTATCTGGAAAGGAGTTTGACACATGGACACGACACTATCTGTACTTTCGCAATGTCCGATTTCTGAGAGTTAATGTTGTCTGACCAGAAGAAACTGAGATTTGGGGATATATTCTCTCTGTATCGCTGAATCGTTACATATTGCGGGATAAACTTGTAAttgtaatttccgattgagccaacatgcagcgtttaccgtgaatacTGTCTCCGCTAAAGCGGGAACATTACCTTGActtttcaatcacgctgtaaagctgaacttccgcgatacggattgaatagagcccgttgggactctgtgtgtgtgtgtgagagagagagagagagagggggggggggtccatttaGTTGATGCCTGGGGTGTATTTAGGCTATTAGGACAAATTAATGTAGTTCCCTCCCCGTTTCGTCGTTTGCAAGGTTTCTACAACAGATCTGGTGATGTCTTCGCTTctgttattttattaaaacacagaaGGTGGTCTGATCTATTTGAGTTATGTAAATCAACAGCTGCTCATAACGGCAGTCCAGACTCAGTCCAGCGGAGAGGTAGTCTGGAGAGCTTGTACGGGAACAGGGACAACTTGTATAACGGTTTTTTTCTGCGTTTCAAATGAGTGTTAATTGATGTCTGAAAGGGAGCAGCTTTATAATCTAGTCTACTGATACGGTGTGATTGGATTTACCGACACAGAGAGATGACTCGTATGAAAGAAGCGTAAAGATGCCATCGTGGATCAGGCTGACGGTTCTCCTGTCTGCGCTGACAGTCCACTGCTTTCTGGACGGGACCTGTCCACGGAGAGaccccCCTCCCAGGGTGCTGGTGGTGTCCCCAGGCAGCGTTCTGGTCTTGGCCTGTAGTGGTCAGGTGGAGGTGAACGGGCTGGAGGTGACGGTTAACAGGGCCAAACACACCAGCACCATCGCTAGAAATGGAAAATACACCAGTGTCATTACCGGAGTACACCCCTCCACTGTCAGCACCACAACAAACACCACATCTAACGGAACCACTGTCAGCACCACAACAGACACCACATCTAACGGAACCACTGTCAGCACCACAACAGACACCACATCTAACGGAACCTTTGTCAGCACCACAACAGACACCACATCTAACGGAACCACTGTCAGCACCACAACAGACACCACATCTAACGGAACCACTGTCAGCACCACAACAGACACCGCATCTAACGGAACCACTGTCAGCACCACAACAGACACCACATCTAATGGAACTACAGTCAGTGCTATAAAAGACGGTAGTGATAATGGAACTACAGTCAGTACTATAAAAGACGGTAGTGATAATGGAACTACAGTCAGTACTATAAAAGACGGTAGTGATAATGGAACTACAGTCAGTGCTATAAAAGACGACAGTGATAATGGAACTACAGTCAGTGCTATAAAAGATGACAGTGATAATGGAACTACAGTCAGTACTATAAAAGACGGTAGTGATAATGGAACTACAGTCAGTACTATAAAAGACGGTAGTGATAATGGAACTACAGTCAGTGCTATAAAAGACGACAGTGATAATGGAACTACAGTCAGTGCTATAAAAGATGACAGTGATAATGGAACTACAGTCAGTACTATAAAAGACGGTAGTGATAATGGAACTACAGTCAGTACTATAAAAGACGACAGTGATAATGGAACTACAGTCAGTACTATAAAAGACGGTAGTGATAATGGAACTACAGTCAGTGCTATAAAAGACGACAGTGATAATGGAACTACAGTCAGTGCTATAAAAGACGGTAGTGATAATGGAACTACAGTCAGTGCTATAAAAGACGACAGTGATAATGGAACTACAGTCAGTGCTATAAAAGACGGTAGTGATAATGGAACTACAGTCAGTGCTATAAAAGACGGTAGTGATAATGGAACTACAGTCAGTGCTATAAAAGACGGTAGTGATAATGGAACTACAGTCAGTACTATAAAAGACGGTAGTGATAATGGAATAGACACATTTTCTACTGGAAAGGACACTATTGTCCTTACTGTAACAGACACTCCTGTCACAGATGATACCGGGACAGACAGTAGGGAGAAAACCGTCATCAGGAACACTCGTGCAGGAAACCACACTCTTACTGTGAGAGAAGTTAACAAAGGGAATGGAGAGAATGAGGAAGATGAAACAGAGGAGGAGCAcaaaggaggaggagagcagagggatacAGGGCGGAGTCTTTTCACTGTCAATCAATCAGGACATACAGATACACAGAAACTATTTCCTCTTACTGGGACATCGCTCCAACCAACCAGAGACAGCGGAGTGGGAGGGGCTGACACTGAGCTGTCCTCTAATCGGTGGACGGATGCAATGGACAGTGAGCATGActatgaggaagaggaggagggggggaggatggTGAGGGGGCTGAGAGGGCGGTCTCAGTGGAGACTGAACGGGAGGccgctgagaggaggagaggaaagaggaggagtagtGGTGTTAGGGAGGAGAGGCGCCACTCTGACCCTGCCCTCCCTGGCGGTGGGTGACTCTGGGAACTACAGCTGCCACCGCGGGGGCAAACTGGTCTCCTGTCTGAGGGTGAGCGTGGCAGTTCCCCCAGAGAGGCCTAAGCTGTCCTGCTATAAGAGGTCACCCAGCAGTAAGATCCGCTGTGATTGGACAGCCAGTCAACCGGTGACTCCTGTCCCTCAGTGCTACCTCCTCCTACGGAAAGGtctatcaGGGTCATTCTCTCGTGTCAACTGTTCTTACTCCGCCCTGCTGTCTCGGTGTTGGTGTGCTATAGGTCATcaagagaaggagagtagagagcCACACCTGGCCTACCTGTGTGTCACCAACACTGCTGGCAACACCACCAGCCCTCTCCTAGACTTCACACCTCTGGacattattaatccagACCCCCCCAGCTCAGTGGTGGTGAGGGGTGTggaggggcaggagaggagactgagggtgGGCTGGGCTGTTCCTCACTcctggaaagagagagaccgCTATCACGAGCTGCTTTATGAGCTCAGATACCACACCATGCCACACGGAACACAGatAAAAGGGACCACCACAGCCCGGTTCTACACTATAACAGATGCGTTGCCAGGAGTACAGTACCTGATCCAACTCAGAGCTAAGGAAGAGTTTGATGGCCACTGGAGTGAATGGAGCACGGCTGTCTACGCCAACACCtggacagCCCCTGTGCCAACTGCGTTCAGCGATCTTTCTACTGTTATgGACTACACAGACGACACAGATTCTGGCTCTGGTATGACAGAAGAGACATCAGtctctgagTCTCGGGGTGATGTGGAGGTGTGGCCTCATGTCCTGTGGGTGGTTGCTTCCTGTGTGCTGCTGTCCATCACTCTGTTGTCCACCTACCTCTACAGacaCAGGGAGAGGTTCCTGTCTAAGCTGTGGAGGTTGAgtcccgtctcctcctctcctgcttgCCCCTCCCCCCCAGTCACAGCCCTGCCTACCCAGGAAGGACATGCCCTCGTGAACTTTGACCACCCAATCTATGGGGAACCTGTCccacaggaagaagagaggaaggaggaggatgaagaggaggaagaagaggagaagggggaagTTATTCGCTTTAACAACACAAGCTATTTTCTGGTCCAGAGCAAATGATATGCCTGCTCTTAAAACAAACCCCTTACCCTCTATCCCAGGCCCTTACCGCTAGCCCCCTGTTCCCCTAGTCCAGGCTGGAGAAGCCCTGTTATTTCACTGTTTGGATGTGTGCAGTATTTTGTTCTCATTGGGGAAAATGAGCCAGTAGAGTAATGATGTAAATATTCATTTGTGTGTCTATAAAAAAGTATTGGGTTTTTGTAAATAATTTTGTCAGAATGAAATAAATAGTTTTGAATACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251860 lncRNA downstream 52698 7154745 ~ 7155223 (-) True G220722
TU251327 lncRNA downstream 87418 7120287 ~ 7120503 (-) True G220281
TU251324 lncRNA downstream 89201 7118482 ~ 7118720 (-) True G220278
TU251318 lncRNA downstream 92029 7115603 ~ 7115892 (-) True G220272
TU251316 lncRNA downstream 94198 7113165 ~ 7113723 (-) True G220270
TU251930 lncRNA upstream 48399 7268477 ~ 7269155 (-) True G220778
TU251941 lncRNA upstream 60968 7281046 ~ 7283889 (-) True G220786
TU251945 lncRNA upstream 70788 7290866 ~ 7291132 (-) True G220790
TU251946 lncRNA upstream 71219 7291297 ~ 7291551 (-) True G220791
TU251947 lncRNA upstream 71759 7291837 ~ 7292049 (-) True G220792
XR_002471280.2 mRNA downstream 214076 6988898 ~ 6993845 (-) False LOC110508339
XM_021588793.2 mRNA downstream 214080 6988898 ~ 6993841 (-) False LOC110508339
XR_002471278.2 mRNA downstream 214922 6988898 ~ 6992999 (-) False LOC110508339
XM_036967226.1 mRNA downstream 228732 6976163 ~ 6979189 (-) True zgc:174935
XM_036964028.1 mRNA downstream 254047 6953156 ~ 6953874 (-) True LOC118944481
XM_036967377.1 mRNA upstream 1918 7221996 ~ 7290542 (-) False LOC110520786
XM_036967394.1 mRNA upstream 1918 7221996 ~ 7290542 (-) False LOC110520786
XM_036967380.1 mRNA upstream 1918 7221996 ~ 7311103 (-) False LOC110520786
XM_036967403.1 mRNA upstream 1918 7221996 ~ 7311103 (-) False LOC110520786
XM_036967387.1 mRNA upstream 1918 7221996 ~ 7320978 (-) True LOC110520786
TU251896 other downstream 6500 7176392 ~ 7201421 (-) True G220751
TU251306 other downstream 107751 7099338 ~ 7100170 (-) True G220261
TU251284 other downstream 124230 7082745 ~ 7083691 (-) False G220242
TU251262 other downstream 146090 7019976 ~ 7061831 (-) False G220229
TU251959 other upstream 208592 7428670 ~ 7436171 (-) False LOC110520792
TU251958 other upstream 208756 7428834 ~ 7436171 (-) True LOC110520792
TU252079 other upstream 297122 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other upstream 297122 7517200 ~ 7524492 (-) True LOC110508454
TU252088 other upstream 307948 7528026 ~ 7530317 (-) True LOC110508472

Expression Profile